Vibrio breoganii: A6E01_01835
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Entry
A6E01_01835 CDS
T04649
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vbr
Vibrio breoganii
Pathway
vbr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vbr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A6E01_01835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vbr03021
]
A6E01_01835
Transcription machinery [BR:
vbr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A6E01_01835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
EXOC6_Sec15_N
Motif
Other DBs
NCBI-ProteinID:
ANO32027
UniProt:
A0AAN0XT64
LinkDB
All DBs
Position
1:complement(368832..370676)
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AA seq
614 aa
AA seq
DB search
MDQNKQSQLKALVLKGKEQGYLTYAEVNDHLPPEIVDSEQVEDIIQMINDMGIKVVENAT
EIDDDTINDENEEVDEDAAEAAVAALSTVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQASVAEFPGTIPYVLEQFDKVQAEELRLTDIISGFVDPDDDGTTAPTA
THVGSELAETDLKEEDADDADDADDDEEEDTGIDPELALERFTELRKTYQDLQLVSNTEG
RDSKAFKVATAKVNDVFREFRLTPKQFDHLVTQLRTSMERVRTQERLIMRQTVEYGGMPK
KEFVKLFTGNESNDAWVDQTLSSDAPYKEKIRRNEEDIRRSIQKLKSIEQETSLTVQSIK
DISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPL
PEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATS
LKFATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSETLRSFLDE
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaataagcagtcacagcttaaagcacttgttctaaaaggcaaagagcaaggc
tatctcacatatgctgaagtgaacgaccatcttccacctgagattgtcgactctgaacag
gttgaagatatcattcagatgatcaacgacatgggcattaaagtagttgaaaatgctact
gaaattgatgacgacactatcaacgacgaaaatgaagaagtcgatgaggatgcagcagaa
gctgccgttgccgctcttagtaccgttgaaagtgaaattggccgtacaaccgatccagtc
cgcatgtacatgcgtgagatgggtactgttgagcttctaactcgtgaaggcgagatcgat
atcgctaagcgtatcgaagatggcatcaatcaagttcaagcatcagttgctgaatttcct
ggcacaatcccgtatgttttagagcagttcgataaagttcaagctgaagaacttcgccta
acagacatcatttctggttttgttgacccagatgatgacggtacaacagcaccaacagca
acacacgttggttctgagctagctgaaactgatctgaaagaagaagatgcagatgatgca
gatgatgcagatgatgacgaagaagaagatacaggtatcgatccagagcttgctctagaa
agatttactgaacttcgcaaaacgtaccaagatctgcagttggtttctaacactgaaggt
cgcgatagcaaagcctttaaggtagcaacagctaaggtaaacgacgtattccgtgaattc
cgtcttacgccaaagcagtttgaccatctggtaacgcaacttcgcacctctatggagcgc
gttcgtacacaagagcgtttgatcatgcgtcaaaccgtagaatacggtggcatgccgaag
aaagagttcgttaagctctttaccggcaatgaatcaaacgatgcatgggtagaccaaacc
ctatcttcagacgcaccttataaagaaaagatccgtcgtaacgaagaagacatccgtcgt
tctatccagaagcttaagagcattgagcaagagacatcactaacggttcagtctattaaa
gacatcagccgtcgtatgtctatcggtgaagctaaagctcgccgtgcgaagaaagagatg
gtagaagcgaacttacgtcttgttatctctatcgcgaagaaatataccaaccgcggccta
cagttcttggatcttatccaggaaggtaacattggtctgatgaaagcggttgataagttc
gaataccgtcgtggttacaagttctctacttatgcgacttggtggattcgtcaggcaatt
actcgttctatcgctgatcaggcgcgcactattcgtatccctgtgcacatgatcgagacc
atcaacaaactgaaccgtatctctcgtcagatgcttcaggagatgggtcgtgagcctctg
ccagaagaattggcagaacgcatgcaaatgcctgaagataagattcgtaaagtacttaaa
atcgctaaagagccaatctctatggagacaccaatcggtgacgacgaagattcgcaccta
ggtgatttcatcgaggatacgactcttgagctgcctttagactctgcaacggcaactagc
cttaagtttgcaactaaagacgttctagcaggcttaacacctcgtgaagcgaaagtacta
cgtatgcgctttggtatcgatatgaacactgaccacactctagaagaagttggtaagcag
ttcgacgttactcgtgagcgtatccgtcagatcgaagcaaaagcactgcgtaaactacgt
cacccaagccgctcagaaactctgcgtagcttcctagacgagtaa
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