Vibrio breoganii: A6E01_04995
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Entry
A6E01_04995 CDS
T04649
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vbr
Vibrio breoganii
Pathway
vbr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A6E01_04995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vbr03400
]
A6E01_04995
Enzymes [BR:
vbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A6E01_04995
DNA repair and recombination proteins [BR:
vbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A6E01_04995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANO32591
UniProt:
A0AAN0XU12
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All DBs
Position
1:complement(1070376..1073831)
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AA seq
1151 aa
AA seq
DB search
MDNHSLFALPIASTAGDRKQLGNLQGASLAIAVAQLNKQHQGPTLLIVSDPQTALKLQME
LEQFSSAPVSLFPDWETLPYDSFSPHQDIISDRISTLYQLPTLDHGIIIVPISTLLQRQS
PREFLLQHTLMVKAGDLFSLDKLRMQLEKSGYRNVDQVFGPGEYASRGSILDLFPMGSSD
PYRVDFFDDEIDTIRTFDPENQRSIADIDEIRLLPAHEFPTNEEAIEDFRIRWRQKFDAR
REPESVYMQVSKGTWPAGIEYWQPLFFENTETLFDYLPQNTLLLSVGEIEPAIDTFLTDV
DYRFDQRRVDPLRPLLEPTELWMKKDELFAAIKQWPQVKLNKESTDTKAGRFNLDIEPLP
ALAAAPQTKEPMSALRQFSEGYTGKIVFSVESEGRREALLELLSPVKIAPKAVPSLEDAL
SGNDKFTLVLGASEHGFIHEGPDFALICESDLLGDRVIQRRKKDKRAVNSDTVIRHLAEL
KPGQPVVHLDHGIGRYLGLQTLEAGGIKTEYVTLEYLNESKLYVPVSSLNLISRYSGGAE
DTAPLHKLGSESWGKARRKAAERVRDVAAELLDVYAKRELKPGYKFQLDREQYAQFKAGF
PFEETDDQAQAINSVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVSTDNAKQVAVLVP
TTLLAQQHFENFRDRFANLPVRVEVLSRFKSAKEQKQILADVAEGKVDIIVGTHKLLQDD
IKFADLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQSDDAIVREAVLREIMRGGQVYFLHNQVDTIHKVAQDLEKLIPEAR
ITTAHGQMRERELESVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMNRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAVTKDAAKRLEAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIHSIGFTLYMEMLEQAVEALKEGKEPSLDDLLREQTEVELRLPALLPDDYI
PDINTRLSLYKRIASVANDNQLTEMKVELIDRFGPLPDATKNLLQVSEIKLAAAAIKVDK
VEAHEKGGYIEFYPDADINPMYLVKLLQSQPNKFAMDGPTKIKFMQSLVDRRDRVSYVKQ
LIEDFAQNRVA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggataaccactcgctttttgctctaccgattgcgtccaccgctggcgatagaaaacag
ctaggcaacctacaaggtgcgtcattagctatcgctgtagctcagttgaacaaacaacac
caaggaccaacgctgttaatcgtgagtgacccgcagacagcactaaaattgcagatggaa
ttggagcaatttagctctgcgcctgtttccttgttcccggattgggaaacactgccctat
gacagtttttctcctcaccaagatattatttccgaccgcatttctaccctgtaccaactg
ccgacccttgaccatggcatcatcattgttcccattagcactctattgcagaggcagtct
ccaagagagtttctcctacagcacaccttgatggtgaaagcgggcgacctcttctctcta
gataagctcaggatgcaacttgaaaagtcaggctatcgaaacgttgaccaagtatttggt
cccggtgaatacgccagtcgtggttctatcttagacctgttccctatgggaagctctgac
ccgtatcgcgttgactttttcgacgacgagatcgacaccattcgcacctttgatcctgag
aatcagcgctctattgccgatatcgatgagattagactgttacctgcccatgaatttccc
accaatgaagaggccattgaagacttccgtattcgttggagacaaaagttcgatgcaaga
cgcgagcccgagtcggtttatatgcaagtgtcaaagggcacttggcccgcagggattgag
tactggcaaccactgttttttgagaacacagaaaccctgttcgactatctgccacaaaac
accttactgctctctgtaggtgaaatagaaccggcaatagatacattccttaccgacgtt
gattatcgttttgatcagcgacgtgtagatccgctgcgtccactgctagaacccacagag
ctttggatgaagaaggacgagctatttgccgctattaagcaatggccacaggttaagctc
aataaagagagcactgataccaaagcaggtcgcttcaacctagacatagagccgctaccg
gcgcttgccgcagctccgcaaaccaaagagccaatgtcggctctgcgtcagttcagcgaa
ggctataccggcaagatagttttttctgttgagtctgaaggccgtcgcgaggctttgtta
gagctactaagccctgtcaagattgcgccaaaagcggtgcctagtcttgaagatgccctt
tctggtaatgataagttcactctcgtccttggcgcctcagagcatggcttcattcatgaa
ggccctgattttgcgctgatttgtgagagtgatttacttggcgatcgcgtgattcaaagg
cgcaaaaaagataaacgagcggtcaatagcgatacggttatccgccacctagccgagctt
aaacccggccagccagttgtgcatttagaccatggtattggtcgctatcttggtctgcaa
accctagaggctggtggcatcaaaaccgaatacgtgactcttgagtacctgaacgaatcc
aagctgtatgttccggtttcttcactcaatctcattagccgttactctggtggcgcagaa
gataccgcgccactgcacaaacttggcagtgaatcatggggtaaggctcgccgtaaagcg
gcagagcgagtgcgcgatgtggctgctgaacttctggatgtgtacgccaagcgtgaactt
aaaccgggctataagtttcagttagatagagagcaatacgcccaatttaaggcgggtttc
ccatttgaagaaaccgatgaccaagctcaagctatcaactccgttctctcagatatgtgc
caagccaaagccatggacagattggtgtgtggtgatgttggctttggtaaaacggaagtc
gccatgcgcgccgcgttcgtgtccaccgataatgccaagcaagtggcggtacttgtgcca
actaccctgctcgctcagcagcattttgaaaactttcgagaccgctttgccaacctgccg
gttcgtgtagaggtattatcccgattcaagagtgccaaagagcagaaacaaattctggct
gatgtggctgaaggtaaggtcgatattattgttggcactcacaaactcctgcaagatgac
atcaagtttgccgatcttggtttattaattgtcgatgaagagcacagatttggcgtaaga
caaaaagagaagatgaaggcgatgcgtgctgatgtcgatatcctaacgctgaccgcgacc
ccaataccgcgaacgctgaatatggcaatgagtggcatgcgcgacctctctatcatcgcc
acaccaccagctcgccgcttagcaatcaaaacctttgttcgtcaaagtgacgacgccata
gttcgcgaagccgttttgcgtgagatcatgcgcggtggccaagtgtatttcttgcacaat
caagtggacaccatccataaggtagcgcaagaccttgaaaagctaatacccgaggcccgc
attactaccgcacacggtcagatgcgagagcgcgaactggaatcggtaatgaacgatttc
taccaccagcgctttaacctattggtgtgtaccaccatcattgaaaccggtattgatgta
ccaacggccaataccatcatcatgaatcgtgcagacaatctaggtttagcccagcttcac
caattacgcggacgtgtgggtcgctcgcaccaccaagcctatgcttacttgcttaccccg
caccctaaagccgtcactaaggatgcagccaagcgtcttgaggccattgcctctcttgag
gacttgggcgcaggcttcacccttgctacgcacgaccttgaaatacgtggcgctggcgaa
ttgttgggtgatgagcaaagtggccagatccactctattggcttcaccttgtatatggag
atgctagagcaagcggttgaagcattgaaagaaggtaaagagccatcactggacgaccta
ctgcgtgagcaaaccgaggtagaactgcgattgcccgcattattaccggatgactatatc
ccagatataaatactcgcctgtcgctttataaacgtattgccagcgtggctaacgataac
caacttaccgagatgaaggtcgaactcatagaccgcttcggcccacttccagatgccacg
aagaacctgctacaagtctctgagataaaacttgcagcggcggccattaaggtagacaaa
gtcgaagctcatgagaaagggggctacatcgagttctatccggacgctgacataaacccg
atgtatttggttaagctattgcagtcacaacccaacaagtttgcaatggacgggccgact
aagattaaatttatgcaaagcttggtcgaccgcagagatcgcgtctcttacgttaagcaa
ttaatcgaagattttgcacaaaatagagtggcgtaa
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