Vibrio breoganii: A6E01_12405
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Entry
A6E01_12405 CDS
T04649
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vbr
Vibrio breoganii
Pathway
vbr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vbr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A6E01_12405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vbr03021
]
A6E01_12405
03400 DNA repair and recombination proteins [BR:
vbr03400
]
A6E01_12405
Enzymes [BR:
vbr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A6E01_12405
Transcription machinery [BR:
vbr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A6E01_12405
DNA repair and recombination proteins [BR:
vbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A6E01_12405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ANO33958
UniProt:
A0AAN0XWJ5
LinkDB
All DBs
Position
1:complement(2677039..2681247)
Genome browser
AA seq
1402 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEAGMTDLEKGQMLTEEEYLDKLEEWGDEFTAKM
GAEAIKDLLSTMDLVQEAELMREELETTNSETKRKKVTKRLKLVEAFVASGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLAGPEEAEKAYRTK
SAELHARVKVRITETIKDEDGNSTTETKMVDTTVGRAMLWQIVPTGLPFDLVNQKLGKKQ
ISKLLDEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPQAKYDEIESAEEE
VREIQDQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMDNLSSETVINRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGVEMMPHIEGGDVKVALSELAL
GRVVAEDVIKPGTEEVLIPRNTLIDEKWCQIMEENSVDSMKVRSVVTCDADFGCCALCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQTKNDGTPFL
HNAKYVVNKEGKLVITSRASELTIVDELGRTKEKHKLPYGTILNIKESDLESAKLDSGYV
IANWEAHTLPIITEVAGSIQYVDMIDGVTVSRQTDDLTGLSSSEVTDPAARPAAGKDMRP
AIKLVDAKGNDVMIPGTDMPAQYFLPGKAIVNIEDGAEVGVGDTLARIPQKSGGNKDITG
GLPRVADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITREGGDAYEEMIPKHRQLN
VFEGEKVERGDVIADGPETPHDILRLRGIHAMTQYIANEVQEVYRLQGVKINDKHIETIV
RQMLRKCTITHAGDSEFLPGEQVEYSQVKIANRALEAEGKEPAGFERELLGITKASLATE
SFISAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQNRQASREEQP
GPSAEQATDNLAALLNAGFSDE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagactgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgattcgttcatggtcttttggtgaagttaaaaag
cctgagacaatcaactatcgtacgttcaaacctgagcgcgatggtctgttctgtgcacgt
atctttggcccagttaaagattacgaatgtctatgtggcaaatacaagcgtctgaagcac
cgcggagttatctgtgagaagtgtggcgtagaagttacacaaactaaagttcgtcgtgac
cgcatgggccacatcgagctagcgtcgcctgtagcgcacatttggttcctaaaatcacta
ccgtctcgtatcggtctactaatggatatcccactgcgtgatatcgaacgcgttctttac
ttcgaaatgtacgtagtaacagaagcgggtatgactgatctagaaaaaggtcagatgctt
actgaagaagagtatctggacaaactagaagagtggggtgacgagttcactgcgaagatg
ggtgcagaagcgatcaaagatctgctttctaccatggatctcgtgcaagaagctgaacta
atgcgcgaagagttagaaacgactaactctgaaactaagcgtaagaaagttactaagcgc
ttgaagttggttgaagcattcgtagcatcaggtaacaaccctgagtggatgattctgact
gtacttccagtacttccgccagatctacgtcctctagtaccactagatggcggtcgcttt
gcgacttcagatctgaacgacctataccgtcgtgttatcaaccgtaacaaccgtttgaag
cgtctactagagctatctgctccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgcttctagataacggtcgtcgcggtcgtgctatcacaggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttcttggtaagcgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctatttaagccattc
atctacagcaagcttgagcttcgtggtctagcgacaacgatcaaagcagctaagaagatg
gtagagcgtgaagaagcagtcgtttgggatatcctagacgaagttattcgcgaacacccg
gtactattgaaccgtgcacctacacttcaccgtctaggtatccaagcgttcgaaccagta
ctaatcgaaggtaaagcgatccagctacacccacttgtgtgtgctgcgtacaacgccgac
ttcgatggtgaccagatggcggtacacgtacctctaactctggaagctcagcttgaagca
cgtacgctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatcctatcatc
gtaccttctcaggacgttgtattgggtctttactacatgactcgtgacaagatcaacgtg
aaaggtgaaggcatgtaccttgctggcccagaagaggctgagaaggcataccgcactaag
agcgctgaacttcacgcacgtgtaaaagttcgtattactgaaaccatcaaagatgaagac
ggtaatagcacgacagaaactaagatggtagatactactgtcggtcgtgcaatgctttgg
cagatcgttccaacgggtctaccgtttgatctagtaaaccaaaagctaggcaagaagcag
atttctaagcttctagatgaggcttaccgtaagcttggtcttaaagacactgttatcttc
gctgaccaaatcatgtacacaggttttgcttacgcggcactatctggtgtatctgttggt
atcgacgatatggttgttcctcaagctaagtacgatgagattgaatcagctgaagaagaa
gtacgtgaaatccaagaccagtaccaatcaggtctggtaactgcgggtgagcgttacaac
aaagttatcgatatttgggcgtctacgaacgaccgcgttgcgaaagcgatgatggataac
ctatcttctgaaactgtgatcaaccgtgacggtgaagaagaacaacaagagtcgttcaac
agcatctacatgatggccgactccggtgctcgtggttctgctgcgcagattcgtcagctt
gctggtatgcgtggtctgatggctcgtccagatggttcaatcatcgagacgccaatcaca
gcaaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacagcactgaaaacagcgaactccggttacctaacgcgtcgtcta
gtagacgttgcacaggacgttgtagttcacgaacatgactgtggcactcatgaaggcgtt
gaaatgatgcctcatatcgaaggtggtgacgttaaagttgcgctttctgagctagctcta
ggtcgtgttgtagctgaagatgttattaagcctggtaccgaagaagtactgatcccacgt
aatactctaattgatgagaagtggtgtcagatcatggaagaaaactctgtagacagcatg
aaagtgcgctcagtagttacctgtgatgcagacttcggttgttgtgcactgtgttacggt
cgtgacctagcacgtggccacctagtgaaccaaggtgaagcagtaggtgttatcgctgct
cagtctatcggtgaacctggtacacagcttaccatgcgtacgttccacatcggtggtgcg
gcatcgacagcggctgctgaaaacagcatccagactaagaatgacggtacacctttcctt
cacaacgctaagtacgttgtgaacaaagaaggtaagctagtgattacttctcgtgcgtct
gaactaaccatcgttgatgagttaggtcgtacgaaagagaagcacaaacttccatacggt
acgattcttaacattaaagaaagcgatcttgaatcagcgaagctagattctggttatgta
atcgcaaactgggaagctcacacactgccaatcatcactgaagtggcaggtagcatccag
tacgttgacatgattgatggcgtaacagtttctcgtcaaacagatgaccttacaggtcta
tcttcaagcgaagtaactgaccctgcagcacgtcctgctgctggtaaagacatgcgtcca
gctatcaaacttgttgatgcgaaaggtaacgatgtaatgatccctggcactgatatgcca
gctcagtacttcctacctggtaaagcgattgtaaacatcgaagatggcgctgaagtaggc
gttggtgacactcttgcacgtatccctcagaaatctggcggaaacaaagatatcaccggt
ggtctaccacgcgttgctgacttgtttgaagctcgtaagcctaaagagcctgcgattctt
gctgagcacacaggtactgtgtcgtttggtaaagaaacgaaaggtaagcgtcgtctagta
atcactcgtgaaggcggagacgcttacgaagagatgattcctaagcatcgccagctgaac
gtgttcgaaggtgagaaggttgagcgcggtgatgtaatcgccgacggccctgagactccg
catgatatcctacgtctacgtggtatccatgctatgactcagtacatcgctaacgaagta
caagaagtttaccgactacagggcgttaagattaacgataagcacattgagactatcgtt
cgtcaaatgctacgtaagtgtactattacacacgctggtgactctgagttcctacctggc
gagcaagtggaatactcacaagttaagattgctaaccgtgcactagaagcagaaggtaaa
gagccagcaggctttgagcgcgagctactaggtatcactaaagcatctctagcaactgag
tcgttcatctctgcggcatcgttccaggagacaactcgcgtactaacagaagctgctgtt
tctggtaagcgtgatgagcttcgtggtctgaaagaaaacgtaatcgtgggtcgtctgatc
ccagcgggtacaggtttcgcttaccaccagaaccgtcaagctagccgtgaagagcaacca
ggtccatctgctgaacaagcaacggataacttggctgcacttctaaacgcaggtttctct
gacgagtaa
DBGET
integrated database retrieval system
