Vibrio breoganii: A6E01_15420
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Entry
A6E01_15420 CDS
T04649
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vbr
Vibrio breoganii
Pathway
vbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6E01_15420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vbr03019
]
A6E01_15420
03009 Ribosome biogenesis [BR:
vbr03009
]
A6E01_15420
Enzymes [BR:
vbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A6E01_15420
Messenger RNA biogenesis [BR:
vbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A6E01_15420
Ribosome biogenesis [BR:
vbr03009
]
Prokaryotic type
rRNA helicases
A6E01_15420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANO34589
UniProt:
A0AAN0XXV2
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All DBs
Position
2:550448..552370
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AA seq
640 aa
AA seq
DB search
MQESEIKFSDLELNEQILSALDGMGFVSPTPIQAASIPLLLEGKDALGKAQTGTGKTAAF
SLPLLNKLNLDQRKPQAIILAPTRELAIQVAAEIKNLGKNIRGLKVLEIYGGASIVDQMR
ALKNGTHIVVGTPGRVQDLINRDRLHLDEVNTFVLDEADEMLNMGFVEDVTAILEHAPAS
AQRVLFSATMPPMLKKIVERFLRDPAFVDVAGKNHTVDKVEQQFWVVKGIEKDEAMTRIL
ETEETDASIVFVRTRQDTERLAGYLADRGFKVAALHGDIPQSQRERTVDNIKRGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTI
ERVTKSAMEEIQLPLRDQVAEARLKKLGLELQADTEHASLEKFSELVEKLQTNLEIDAAT
LAAILLRRQQGKRPLFYVGEDPMTSAIARDKKRRAERREGGRDGGREGGREGGRSYGGET
KDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMNSETAG
KLSKLRIRQKETAAVVCDFDDFRESRGGRRDGGGRRDGGRGQREGGGYRGNREGGGYRGN
REGNREGGRDGERRFDRNRGGDNRGNHRGERGHSRRTTAE
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatctgaaattaaattcagcgatttagaactaaacgaacaaatcctttctgcc
cttgacggcatgggttttgtatctcctacacctatccaagcagcttctattcctctgctt
cttgaaggtaaggatgcgctaggtaaagcgcaaacaggtactggtaaaactgctgccttc
tctcttcctcttcttaacaaactgaatctagaccagcgtaagccgcaagcaattatcctt
gcaccaacgcgtgagctagctattcaggttgcagcagagatcaaaaaccttggtaagaac
attcgtggtcttaaggttcttgaaatttacggcggtgcttcaatcgttgatcaaatgcgt
gctcttaagaacggcactcatatcgttgttggtactccaggtcgtgtacaagacttgatc
aaccgcgaccgtctgcaccttgacgaagtaaatactttcgttcttgatgaagcagatgaa
atgctaaacatgggcttcgtagaagacgttaccgctatccttgagcacgctccagcgtca
gctcagcgcgtattgttctctgcgactatgcctccaatgcttaagaaaattgttgagcgc
ttcttgcgtgatcctgctttcgttgatgttgctggtaaaaaccacactgttgacaaagta
gagcaacaattctgggtagttaaaggtattgagaaagacgaggcaatgactcgtattctt
gaaactgaagaaactgatgcttctatcgtattcgtacgtacacgccaagacactgagcgt
ctagcgggctacctagcagaccgtggctttaaagtagcggcacttcacggtgacattcca
cagtcacaacgtgagcgtactgtagacaacattaagcgtggtgttatcgatatcctagtt
gcaactgacgttgttgctcgtggtcttgatgtgcctcgtattactcacgtattcaactac
gacattccatttgatgttgagtcttacatccaccgtattggccgtactggccgtgctgga
cgtaaaggtaaagcgatcctactagttcgcactaaccaaatgcgtatgcttcgtactatt
gagcgtgtaactaagtcagcaatggaagaaatccaacttcctctacgtgaccaagttgca
gaagctcgtctgaagaagctaggtcttgagcttcaagcagacacagaacacgcttctcta
gagaaattctctgagctagttgaaaagctacagactaacctagaaattgatgctgcaact
ctagctgcgattctacttcgtcgtcagcaaggcaagcgtccattattctacgttggcgaa
gacccaatgacttctgctatcgcacgtgacaaaaaacgtcgtgcagagcgtcgtgaaggc
ggtcgtgacggtggccgtgaaggcggtcgtgaaggcggtcgtagctacggtggcgaaact
aaagattgggatacttaccaattacaagttggtcgtgaccaaggtgttcaggttaaagac
atcgttggcgctctagcaaacgaactaggcctaactaaaggttctatcggcgcgatcaaa
ttggctcaaggccacacatttgttcagctaccaaaagcgatgaactctgagacagctggt
aaacttagcaagctacgtattcgtcaaaaagaaactgcagcagtagtttgtgattttgat
gacttccgtgagtctcgtggcggtcgtcgtgatggcggtggtcgtcgtgacggtggtcgt
ggtcaacgtgaaggtggcggctaccgtggtaaccgtgaaggcggtggctatcgtggcaac
cgtgaaggcaatcgtgaaggcggccgtgatggtgagcgtcgtttcgatcgcaaccgtggc
ggtgacaaccgtggtaaccaccgtggtgagcgtggtcactctcgtcgcactacagcagag
taa
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