Verrucomicrobia bacterium S94: EGM51_02145
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Entry
EGM51_02145 CDS
T05990
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vbs
Verrucomicrobia bacterium S94
Brite
KEGG Orthology (KO) [BR:
vbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vbs03009
]
EGM51_02145 (rlmD)
Enzymes [BR:
vbs01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EGM51_02145 (rlmD)
Ribosome biogenesis [BR:
vbs03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EGM51_02145 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
UPF0020
Cons_hypoth95
PCMT
FtsJ
RrnaAD
MTS
Methyltransf_11
DOT1
CMAS
N6_N4_Mtase
Methyltransf_15
Methyltransf_12
PrmA
TRM5-TYW2_MTfase
Methyltransf_4
N6_Mtase
Motif
Other DBs
NCBI-ProteinID:
QBG46262
UniProt:
A0A4P6PAT2
LinkDB
All DBs
Position
complement(485829..487262)
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AA seq
477 aa
AA seq
DB search
MYKKKQMVEVEIIDLGDKNQSFGRLDDGMSIFVQGPAAVGDTVKAEIFKIKKKYLVARMR
ELVKPSPHRTDPVCPYFGLCGGCKWQHMDYTEQLRLKRKQVQDALNHLGGFKTIECADCL
PAPELFGYRNKMDFSFTDLRYLTPDEMGTEPGKHEKPLDFALGFHAPGCFSKAIDIDHCD
LSTPEMNLTLNTVRAFCLEHKEELPIYSTHTHTGELRNLVVRHGGHTGEFMVNLVTSSHN
PQLMKKLTGRLLNALGERLTTFVNNTTSAKNTVAFGEKEYILHGPGYIQDTLGDYTYRIS
ANSFFQTNTVQAEKLYNLILEQAQLKPKDIVYDLFCGTGSITLFASSHCQKVLGVELVES
SVNDARENVGRHGVENCQFIQLDMKDFKTIRPELEAFGSPDVVITDPPRAGMNPKAVNML
LEIAPPVIIYVSCNPASLARDGKMLCEEGRYRLASCQPIDMFPQTNHVESVARFERI
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaaagaaacagatggtggaggtcgaaattatcgacctgggcgacaagaatcag
agcttcgggcggctggatgacggcatgtccatatttgtgcagggccccgccgccgtcgga
gatacggtgaaagccgagatttttaaaatcaaaaaaaaatatctcgtggcccgcatgcgc
gaactggtgaagccctccccccaccgcaccgacccggtctgcccctacttcggcctttgc
ggcggctgcaaatggcagcacatggattacaccgaacagctccggctcaaacgcaaacag
gtgcaggatgccctcaaccacctcggcggcttcaaaacgatcgaatgcgccgactgtctg
cctgctcccgaactgttcggctaccgtaacaaaatggacttttcgttcaccgacctgcgt
tatctcacgcccgatgaaatgggtacagaacccggcaaacatgaaaaaccgctcgatttt
gcactcggcttccacgcccccggctgtttctcgaaagccatcgatatcgaccactgcgac
ctttccaccccggaaatgaacctgacgctcaacaccgtccgcgcattctgtctcgaacat
aaagaagagctaccgatctattccacccacacccataccggcgaactgcgcaacctcgtc
gtccgtcacggcggacacaccggcgaattcatggtcaatctcgtcacctcatcgcacaac
ccgcaactgatgaagaaactgaccggccgactgctgaacgcactcggcgagcggctgacc
accttcgtcaacaacaccacctccgccaaaaacaccgttgccttcggcgaaaaggaatac
atcctccacggccccggttatattcaggatacgctcggcgattacacctaccgaatctca
gccaactccttcttccagaccaacaccgtccaggccgaaaaactgtacaatctgattctc
gaacaggcacaactgaaaccaaaggacattgtatacgatctgttctgcggaaccggttcc
atcaccctcttcgcctccagccattgtcaaaaagtgctcggcgttgagctggttgaaagt
tccgtaaacgatgcccgcgaaaacgtcggacgccacggcgtcgaaaactgccaattcatc
cagctcgacatgaaggatttcaaaaccatcaggcccgaactcgaggccttcggctccccc
gatgtggtcatcaccgaccctccgcgcgccggcatgaaccccaaagcggtaaatatgctg
ctggaaatcgcgccgccggtcattatctacgtcagctgcaacccggcttcgcttgcccgc
gatggaaaaatgctctgtgaagaaggccgataccggctcgcctcctgccagcccatcgac
atgttcccccagaccaaccacgtcgaatccgtcgcccgctttgaacggatttaa
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