Verrucomicrobia bacterium S94: EGM51_03525
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Entry
EGM51_03525 CDS
T05990
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vbs
Verrucomicrobia bacterium S94
Pathway
vbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGM51_03525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vbs03019
]
EGM51_03525
Enzymes [BR:
vbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGM51_03525
Messenger RNA biogenesis [BR:
vbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGM51_03525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QBG46510
LinkDB
All DBs
Position
complement(815225..816535)
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AA seq
436 aa
AA seq
DB search
MQFSDLIQNDKILKAVEDAGFTEPTPIQQQAIPAIGTGRDIIGCARTGTGKTAAFALPLI
QRLEDSWTAAREIRVRALILSPTRELAIQLLENIRKFAAHTELTSLLIHGGTEYEEQILT
LRKGVDILIATPGRMLDLIERKALKLDQVEVFVVDEADRMLDMGFAPDIRKIAPMLPQTR
QALFFSATMPPDALSLATGILHKPMNVSADPVSAVAENIQKSLYYVEKNNKNILLSWMLH
RLKYERILIFCRTRRGADRLTESMRKQDLPVDVLHGDKPQHHRQQLLEAFKTGETPILIA
TDLAARGIDIENISHIINFDLPNEPETFIHRIGRTARAGASGNAISFCDPTEKGYLRDIQ
AHLNEELKVVEDHPFHSEQVKNFSGNVKSKHTPDKKKHVSRIREQTTWRLTPGQQKQLHA
DQAPRKNARRNPRKKK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttccgacctcatccagaatgataaaatcctgaaagccgtcgaggacgccggc
ttcacagaaccgacccccatccagcaacaggcgattccggccataggaaccggcagagat
atcatcggctgcgcccgtaccggaaccggtaaaacagccgcctttgccctgccgctgatt
cagcggctggaagacagctggactgccgcccgcgaaatccgcgtccgcgccctcattcta
tcccccacccgcgaactcgccatccaactactggaaaatatccggaaattcgccgctcat
accgaacttacctcattgctgatccatggcggaaccgaatacgaagaacagattctcacc
ctgcgtaaaggcgtcgatatcctcattgccactcccgggcgcatgctcgacctgattgaa
cggaaagccctcaaacttgaccaggttgaagtgtttgtagtcgatgaagccgatcgcatg
cttgatatgggctttgcaccggacatccgcaaaatcgcccctatgctcccgcaaacccgg
caggccctctttttctcagccaccatgccgcccgacgccctctcgcttgctaccggaatc
ctgcataagcccatgaatgtttcggccgatcctgtttccgccgttgccgaaaacattcag
aaatcactctattatgtagaaaaaaacaacaaaaatatcctgctcagctggatgctccac
cgactgaaatacgaacgcatcctcatcttctgccgcacccgacgcggggccgaccgcctg
accgaatcgatgagaaagcaggatcttcctgtcgatgtcctccacggcgacaaaccgcag
caccaccggcagcagctgctcgaggccttcaaaaccggcgaaacacccatactgatcgcc
accgacctcgccgcacggggcatcgatattgaaaacatctcccacatcatcaactttgac
ctgcccaacgaacccgaaaccttcatccatcgcatcggccgcaccgcccgcgccggcgct
tcaggcaacgccatcagcttctgcgacccgaccgaaaaaggatatctgcgcgacatccag
gctcacctgaacgaagaactcaaggtggtcgaagatcatccatttcattccgaacaggtg
aaaaatttttccggaaacgtaaaatccaaacacacgccggataagaaaaaacatgtcagc
agaatccgcgaacagaccacctggcgcctcacgcccggtcagcagaaacagctgcatgcc
gaccaagccccccggaaaaacgcccgccgcaatccccggaagaaaaagtag
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