Verrucomicrobia bacterium S94: EGM51_05190
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Entry
EGM51_05190 CDS
T05990
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vbs
Verrucomicrobia bacterium S94
Pathway
vbs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EGM51_05190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vbs03400
]
EGM51_05190
Enzymes [BR:
vbs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EGM51_05190
DNA repair and recombination proteins [BR:
vbs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EGM51_05190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
Helicase_RecD
SLFN-g3_helicase
NTPase_1
nSTAND3
RsgA_GTPase
MeaB
AAA_22
NPHP3_N
AAA_16
PIF1
AAA_24
NACHT
AAA_28
AAA_29
AAA
ATP_bind_1
cobW
DEAD
MobB
ABC_tran
AAA_3
T2SSE
NB-ARC
HHH_2
ATPase_2
TrwB_AAD_bind
UvrD-helicase
CbiA
RuvB_N
SRP54
TsaE
AAA_5
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QBG46819
UniProt:
A0A4P6PG89
LinkDB
All DBs
Position
complement(1242883..1245039)
Genome browser
AA seq
718 aa
AA seq
DB search
MDKLDGQVERVVFRNEENGFCVLRVKVRGHKELVTVTGTVPAVNPGEWMAGDGEWFVDPR
HGRQFKAQHLRMSKPDTLEGIEKYLASDMVKGIGKEYAKRLVKAFGRDVFDVIENSSGKL
LKVPGIGKQRKDNIKKAWDEQRNVRQIMSFLFSHGISTTRAFRIHKIYGDKAIERVQRDP
YCLARDIKGIGFLIADRIAMKLGISRDSDLRARAGLEYCLGELTANGHCAYVRNDLLSRA
AELLDIDLDIIDNALEHLLENKRLIQKQNVKGQDLIYLPKLFFAEIELAKKLRALEKGRH
PCPDIDFEKALKWVQQKSGIELANAQRNALRTSVRSKVMVITGGPGVGKTTLVNSVLMIL
KAKKMRVQLCAPTGRAAKRMAETTGMEARTIHRMLQYNPGTGGFIHNAENPLECDVLIVD
ESSMIDVVLAAQLMDAVPLHAAVVIVGDADQLPSVGPGRVLQDIIGSKTLPVAHLDEVFR
QAASSRIVTTAHLINQGKAPEFPDEGEQSDCYFIEADEPEKALNLIGKLVKQHIPKKFRF
RPMDDIQILTPMQKGELGARNLNITMQALLNPSGDEVERFGMTYRVGDKVMQTENDYDKD
VYNGDIGRIVAIDHETSELAVDFEGRRVVYDFRELDELVLSYAITIHKSQGSEYPCVVIP
VHTQHFVLLQRSLIYTALTRARKLVILLGTKKALGLAIIRAESRDRVTTLAERLKEYA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggataaactggacggtcaggttgagcgggtcgttttccggaatgaggaaaacggcttt
tgtgttttaagagtcaaagtacgtggtcacaaagagctcgtgactgtgacggggacggta
ccggcggtgaaccccggcgaatggatggccggggacggggagtggtttgttgatccgcgc
catgggcggcagttcaaagcacagcacttgcggatgtctaaaccggatacgctggagggc
attgaaaaatatctggcctccgatatggtgaagggcatcggcaaagagtatgcgaaacgc
ctggtgaaagcctttggtcgggatgtctttgatgtcattgaaaactcctcgggaaaactg
ctgaaagttccggggattggaaaacagcggaaagacaacatcaaaaaggcgtgggatgag
cagcggaatgtgcgtcagattatgtcctttctgttcagccacggcatcagcacaacgcgg
gcgtttcgtatccataaaatctatggcgacaaagccattgagcgggtacagcgcgatccc
tactgtctggcacgcgacatcaagggtattggttttttgattgcggaccggattgccatg
aagctgggaatttccagggattccgatctgcgtgcgcgtgccggcctggaatactgcctc
ggagaactgacagccaacggacattgtgcgtatgtgcgcaacgacctgctttcacgtgcg
gcggaactgctcgatattgatctcgatattatcgataatgctctggaacatctgctggaa
aataagcgcctgattcagaagcagaatgtgaaaggacaggatctgatctatctgccgaag
ctgtttttcgcagaaatcgaactcgccaaaaaactccgggctctggaaaaaggccgccac
ccctgtccggatattgattttgaaaaagcgctgaagtgggtacagcagaaaagcgggatt
gaactggctaacgctcagcgcaatgcgctccggacgtcggtacggtcgaaagtgatggtt
atcacgggaggaccgggcgtagggaaaacaacgctggtaaattcagtgttgatgattctt
aaggccaagaagatgcgggtgcagctttgcgctcctacaggtcgggcggcgaaacgtatg
gctgaaacaaccggcatggaggcgcgcaccattcaccggatgctccaatataatccgggt
accggcggctttattcataatgcggaaaatccgctggaatgcgatgtgctgattgtggat
gagtcgagcatgattgatgtagtgcttgcggcgcagttgatggatgcggtaccgctgcat
gccgctgtagtgattgtcggggatgcggatcagcttcccagtgtgggaccggggcgtgtt
ctgcaggatattatcggttcaaaaacactgccggtcgctcatctggatgaagtgttccgt
caggcggccagcagtcggattgtaacgactgcccacctgatcaatcagggtaaagcaccg
gagtttcctgatgaaggggaacaaagtgactgctattttattgaagccgatgagccggaa
aaggcactgaatcttattggaaaactggtgaagcagcatattccgaaaaaattccggttc
cggccgatggatgatattcagattctgactccgatgcagaagggcgaactgggtgcccgc
aacctcaatatcaccatgcaggcactgcttaatccaagcggggatgaagtggagcgtttc
ggcatgacctatcgtgtgggtgataaggtgatgcagacggagaacgattatgataaggat
gtttataatggcgatatcggccgtattgtggccatagaccatgaaacctctgagctggcg
gttgattttgaaggacgtcgggtggtgtacgatttccgcgagcttgatgagcttgtgctt
tcctatgcaatcactatccacaaaagccagggcagcgaatatccctgtgttgtgattccg
gtgcatacccagcattttgtgctgctgcagcgcagcctgatctacacagctctgacccgc
gccagaaaactcgtaattctgctcggcaccaaaaaagccctcggactggcgatcatccgt
gctgaatctcgcgaccgtgtcactacgctggcggaacgactgaaagaatatgcataa
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