Verrucomicrobia bacterium S94: EGM51_05805
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Entry
EGM51_05805 CDS
T05990
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vbs
Verrucomicrobia bacterium S94
Brite
KEGG Orthology (KO) [BR:
vbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vbs03019
]
EGM51_05805 (hrpA)
Enzymes [BR:
vbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EGM51_05805 (hrpA)
Messenger RNA biogenesis [BR:
vbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EGM51_05805 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
ResIII
nSTAND3
SRP54
AAA_30
AAA_25
PhoH
NACHT
Ig-CFAP74_3rd
KH_PARP14_8
Helicase_RecD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QBG46933
UniProt:
A0A4P6PEP8
LinkDB
All DBs
Position
1415457..1419302
Genome browser
AA seq
1281 aa
AA seq
DB search
MNTAETKEILQTVKRSLDDVLLRDRSHLNALMRRIRQRIHDNKPVDNLIGKLKDAHFQAL
ERAHRRARVSLKLDYPEILPVSGKKDEIRKLIEENQIVIVCGTTGSGKTTQLPKIAYEAG
AGKTGRIGVTQPRRLAATGMARRVAEEMGADYGKGVGCQVRFDDQTCDETIIKFMTDGIL
LAETQHDRHLLQYDCLIIDEAHERSLNIDFILGYLKNLLRIRPDLKIVISSATLDAESFS
DFFDQAPVIEVEGRTYPVEDFFLPPGKDEELSNHILRAMRWISDVDDRGDVLIFLPGERE
IRDAAKKLEGQHWKSTEILPLFGRLSMGEQQRVFKVGGRRRIILATNVAETSITIPGIHY
VIDSGLVRLSRYNPRTQVQGLQIEQVSQASARQRRGRCGRVTDGICVYLYDKEVLENSAE
YTDPEIRRTSLAGVILQMDMLNLPPIDRFPLIDPPQTALVNEGYKTLYDIGAIDKDRKLT
PIGKQIVRFPLDPHLARMILQAKEEDVLPEVLIIVAFLSIQDVRERPTEKAEAADQAHAK
WKDPRSDFITILNLWNDIEDARRESHGRLRKFCKTNFVNYRRVMEWRNLWKDLKNTDGIS
GSIKRAKKQEVPTALYDGIHRSLLAGLPANIGLKGEDREFTAARNRKFFIFPGSGLFKKP
PEWVMTFSLVETTKLYARIVAEIEPQWVAEIAPHLCKEIYKQPEWNPDKGFVYAKESVLS
GGLTLTHGKPVHFGPIHPEKAREIFIREGMVPGNLKTRGGWLKIHQRMLDDIQALEEKIR
RPGALLDTDAIFHHFDRLLPADVYSVQTLEQWIRKTKARIAMKAEEAMFPQTSPLRMEDY
PEYLTFHHEDFHLIYTFEPGDELDGIALVCPTDKLAFLPDWAPDWLVPGWLEEKVNRLLR
TLPKNLRTTLAPIDQTARTFAHTCTGEHQEPLLTALARWLQLEFKLPVDASDFDEKSLPG
FLRMKVIETKGDEIVKIHTSISEEHRSNVYLNGAETAFAKWSLPPGKDWPGKELPEFITS
DDRGKTRGYPALTAEAGGVGRAVFMNQPQARHAHLAGLAQLFRLKHPDQVKYIEKRPPLS
TGMQLTLSAIDSDFLTDLMNASIVDALTDDLRCEIRDPETFEKRAVIARSEVFEKFEKNA
RILEKLLDQREAIVKAIAELRADFDILHDLEMQLEFLFRPGFIQTLDMFSRYPRYLKAMQ
VRIQRARNNSDADARKLLEIEPFQNRLNEKLLDCENIAGAIDLIEFAMQLEEFRVNRFAP
EIKTPVKVSAQRLEEAWNNLL
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgaatacggctgaaacaaaggaaatactgcaaacggtgaagcgctcactcgacgacgtg
ctgctccgcgatcgttcacacctgaatgcgctgatgcggcgtatccgccagcgtattcat
gacaacaaaccggtcgataacctgatcgggaagctgaaagacgcgcattttcaggctctc
gaacgtgcacaccggcgcgcgcgggtcagcctgaaactggattatcccgaaattcttccc
gtctccgggaaaaaagatgaaatccgaaaactcatcgaagaaaaccagattgtaattgtc
tgcggcaccaccggctcaggaaaaaccacgcagttgcctaaaattgcttacgaagccggt
gccggaaaaaccggccggatcggcgtcacccagccccgccgactggccgccaccggcatg
gcgcggcgtgtcgccgaagaaatgggggcggattacgggaaaggcgtcggctgtcaggtc
cgcttcgatgatcagacctgcgacgaaaccatcattaaatttatgaccgatggcattctg
ctggctgaaacccagcacgaccgccatctgctgcaatatgactgcctcatcatcgacgag
gcccacgagcgcagcctgaatatcgattttattctcggctatctcaaaaatctgctcaga
atccgccccgaccttaaaatcgtcatcagctcggccacgctggatgccgaaagtttttcg
gacttttttgatcaggccccagtaattgaagtcgagggccgcacctatccggtagaggat
ttctttcttccgccgggcaaagatgaagaactctccaatcatatcctgcgcgccatgcgc
tggatttcggacgtcgatgaccggggcgatgtgctgatctttcttcccggcgagcgcgag
atccgcgatgccgcgaaaaaactggaaggccagcactggaaaagcaccgaaattcttcct
cttttcggaagactctccatgggagaacagcagcgcgtttttaaagtgggcgggcgtcgg
cggattattctggcaacgaatgtggccgaaacgtcgatcactattccgggcattcattat
gtcattgattccgggctggtacgactcagccgctacaatccgcgcacgcaggtgcagggc
ctccagattgaacaggtttcacaggccagtgcccgccagcggcgtggacgctgcggccgt
gtgaccgacggtatctgcgtctatctctacgacaaggaagtactcgaaaacagtgccgaa
tataccgaccccgaaatccgccgcacttcgctggccggcgtgatcctgcagatggatatg
ctgaatctgccgccgatcgaccgcttcccgctgatcgatccgccgcagactgcgctggtg
aacgaaggctataaaacgctttatgatatcggcgcaattgacaaagaccgaaaactgacc
cccatcggcaaacagattgtccgattcccgctggatccgcatctggcgcgcatgattctg
caggccaaagaggaagacgttctgcctgaggtgctgattattgtggcgtttctctcgatt
caggatgtccgggaacgcccgacggaaaaagcggaggcggccgatcaggcccacgccaaa
tggaaagacccgcgatctgacttcatcaccatccttaatctctggaacgatattgaagac
gcgcgccgcgaatcccacggcagactccgtaaattctgtaaaaccaattttgtgaattac
cgccgcgtcatggaatggcgcaacctctggaaggatctgaaaaacaccgatggaatttcc
ggctccattaagcgcgcgaaaaaacaggaggttccgacggcgctgtatgacggcattcac
cgcagcctgctggcgggactgccggcgaatatcggactgaagggtgaagaccgcgaattt
acggcagcccgcaaccgtaagttttttatcttccccggatccggcctgtttaaaaaaccg
ccggaatgggtcatgacgttttcgctggtggaaactacaaagctctatgcgcgcatcgtt
gccgaaattgaaccccaatgggttgccgagattgcgccgcatctttgtaaagaaatctat
aaacaacccgaatggaatccggataaaggcttcgtttatgccaaagagtccgtcctctcc
ggcggactgacgctgacccatggaaaaccggtacacttcggccccatccatccggaaaaa
gcccgcgaaatttttatccgtgaaggcatggtgccgggtaatctgaaaacgcgcggcggc
tggctgaaaatccatcagcgcatgctcgatgatattcaggcattggaagaaaaaatccgt
cgtcccggtgccctgctcgacaccgacgccattttccaccattttgaccgcctgctgccg
gcggacgtctattccgtccagacgctggaacaatggatccgtaaaaccaaagcccgtatt
gcgatgaaggccgaggaggccatgttcccgcagacttcaccccttcgaatggaggattat
ccggaatacctgaccttccatcacgaggactttcacctcatctataccttcgaacccggc
gatgaactggacggaattgcgctggtctgccctaccgacaaactggcttttctaccggac
tgggcccccgactggcttgttcccggctggcttgaagaaaaggtcaaccgcctcctgcgc
acgctgccgaaaaatctgcgcaccacccttgcccctatcgatcagacggcccgcactttt
gcccatacctgcacgggtgagcaccaggaacccctgctcacagcattggcccgctggctg
cagctggaatttaaactgccggtggatgcgtctgattttgatgaaaaatcgctgcccgga
tttttacgcatgaaggtgatcgaaacaaagggggatgaaattgttaaaatccatacttcg
atttcggaagagcatcgcagtaacgtctatttgaacggcgcagaaaccgcctttgccaaa
tggtcactgccgccgggcaaagactggcccggcaaagaactgccggaattcattacgtcg
gatgaccgtggaaaaacacggggttatccggcactgacggccgaagcaggaggcgtcggg
cgtgcggtatttatgaatcagccgcaggcgaggcatgcccatctggccggcctggcgcag
cttttccggctgaagcatccggaccaggtgaaatacattgaaaaacgcccgccgctgagt
accggtatgcagctgaccctttccgccatcgacagcgattttctgaccgatctgatgaat
gcgtctatcgtggatgcactgaccgatgatctgcgctgcgaaatccgggatcctgaaacc
tttgaaaagcgtgcggttattgctcgcagcgaagtatttgaaaaattcgaaaaaaatgcc
cggattctggaaaagctgctcgatcagcgcgaagcgatcgtgaaagccattgccgaactt
cgggcggatttcgacattcttcacgatctggagatgcagctcgaattcctgttccgcccc
ggctttattcagaccctggatatgttcagtcgatacccgcgctatctcaaagccatgcag
gtgcgtattcagcgtgcccggaataattccgatgccgacgccagaaagctgctcgaaatt
gaaccctttcaaaaccggctgaatgaaaagctgctcgactgtgaaaatattgcgggggcg
attgatctgattgagtttgcgatgcagctcgaggaattccgtgtaaaccgctttgcgccg
gaaattaaaacaccggttaaggtttctgcacaacggcttgaggaagcctggaataacctg
ttataa
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