Verrucomicrobia bacterium S94: EGM51_07155
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Entry
EGM51_07155 CDS
T05990
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vbs
Verrucomicrobia bacterium S94
Pathway
vbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGM51_07155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vbs03019
]
EGM51_07155
Enzymes [BR:
vbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGM51_07155
Messenger RNA biogenesis [BR:
vbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGM51_07155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QBG47184
UniProt:
A0A4V0ZH14
LinkDB
All DBs
Position
complement(1725032..1726354)
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AA seq
440 aa
AA seq
DB search
MKKENDLNGVFGALLPELGNAVTDAGYHTPSPIQEQAIPYLLEGRDMIGCAQTGTGKTAA
FTLPILQYLVKKNKRPVPKRPEVLILAPTRELAAQIGDSIKKYGKYTRVSHTVIFGGVGQ
HPQVKAIRRGVNMLVATPGRLNDLVGQGLLDLGGVEIFVLDEADRMLDMGFIHDIKKIIK
ELPKKRQSLFFSATMEPKVKQLAESLVNNPAQVAIEPEKPAVERITQKVLFVKKEHKDDL
ILQLMGSKKLDKVIIFTQMKHVANKVARKLEGVGVSAAAIHGNKSQGARTQALADFKSGK
CRALVATDIAARGIDVKEISHVINYDMPVEPETYVHRIGRTARAGAEGDAISMCCAPERD
YLRAIEKLIGFEVPRDLNHSWHSEKAMNATGAEAKPGPKVRQQRGKVTVGNDGRPKNTRK
GPRPGRVKSRRSSQRRSMHG
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaaaacgacctcaatggcgttttcggtgcactgcttcctgaacttggaaat
gcagtaaccgacgcaggttatcatacaccctcaccgattcaggagcaggcgattccgtac
ctgctggagggacgcgacatgatcgggtgtgcccagacgggtaccggaaaaacggcagcc
ttcacactgccgattcttcagtatcttgtgaaaaagaataagcgcccggttccgaaacgg
ccggaagtcctgattctggccccgacgcgcgagctcgcggcgcagattggtgacagtatt
aaaaaatacggcaaatataccagagtttcgcatacggttattttcggcggcgtcggtcag
catccgcaggtaaaagccattcggcgcggggtgaatatgctggtggctacaccgggacgg
ttgaatgacctggtgggccagggactgcttgatttgggcggtgtggaaatcttcgtgctc
gacgaagccgaccgtatgctcgatatgggttttattcatgacatcaaaaaaataatcaaa
gagctgccgaaaaaacggcagtcgctctttttctcggcgacgatggaaccgaaggtcaag
cagctcgcggagtcgctggtgaataatccggcacaggtggccattgaaccggaaaagccg
gcggttgagcggattacgcagaaagtcctgtttgttaaaaaagagcataaagacgatctg
attctgcagctgatgggcagtaagaaactggataaggtcatcatttttacacagatgaag
cacgtggccaataaagtggcacgcaagctcgagggtgttggtgtttctgcggcggcgatt
cacggcaacaaaagccagggtgcgcggacccaggcgctggccgattttaaatcgggcaaa
tgccgggcactggtagccaccgatattgcggcgcgcgggattgatgtgaaggaaatttcc
cacgtcattaattatgatatgccggtggagccggaaacctatgtgcaccggattggacga
accgcccgggccggtgctgaaggcgatgcgatttcgatgtgctgtgcaccggaacgggac
tatctgcgtgcgattgaaaagctgatcggttttgaggtcccgcgggatctgaatcatagt
tggcattctgaaaaagcaatgaatgcaaccggcgcggaggccaaaccgggacctaaggtc
cggcagcagcgcggcaaggttacggtggggaacgacggccggccgaaaaatacgcgaaaa
gggccgcgcccgggccgtgtgaaaagccgccgttcgagtcagaggagaagcatgcatggt
tga
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