Verrucomicrobia bacterium S94: EGM51_08945
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Entry
EGM51_08945 CDS
T05990
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vbs
Verrucomicrobia bacterium S94
Pathway
vbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGM51_08945 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vbs03019
]
EGM51_08945 (pnp)
03016 Transfer RNA biogenesis [BR:
vbs03016
]
EGM51_08945 (pnp)
Enzymes [BR:
vbs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EGM51_08945 (pnp)
Messenger RNA biogenesis [BR:
vbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EGM51_08945 (pnp)
Transfer RNA biogenesis [BR:
vbs03016
]
Prokaryotic type
tRNA degradation factors
EGM51_08945 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
KH_NusA_1st
DUF6154
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QBG47510
LinkDB
All DBs
Position
complement(2111255..2113360)
Genome browser
AA seq
701 aa
AA seq
DB search
MKGTTKVEFEVGGKTMTLETGLLAKQADGAVTCGIGANVVFSAVTSAKEAKEGVDFFPLQ
VEYREKFYAAGRFPGGYIKREARPSEKEILTMRVTDRPIRTLFPDNFHREVQINNMLISS
DQTLDTDVLSVNAASAALTLTDLPFDGPIGAVRIVRNDGEWIINPNHDQLAASDIDLTYC
GSRDKVMMIEGSAKEIPEAEFIEAMKTAHAEVVKIIDGQLKLRAELGLPEKVYAPEPKDT
TLLDKARELVGDKFKELMKISGKLERQDAVSALKEELKPQMQDLFPEMTEDEYFHAFHDL
EVETVRKNVLEDHTRIGGRGMLEIRPLDIQVGVFPQLHGSAVFGRGETQTLCTVTLGTTK
EAQRFDAVTGGEDEKNFILHYNFPPYSVGECGRLGMTSRREIGHGNLAERSIAPVMPDDF
PYTVRVVSEVMGSNGSSSMASACGGCLALMDAGVPLKAPVAGISVGLFTDGQDKSVEVID
ILGVEDHCGDMDFKVVGTRKGITGFQVDLKVHGMNWDQVEEAFEIARKGRCDILDQMEAV
ISSPRQELAATAPRITTVKIDPEKIGALIGPGGKHIRAITDGTGAQIDIEEDGTVNIFAV
DADAMEAAIREVNALTAEIEIGRIYDGKVIAVKDFGAFVECMPGKEGLVHISEMANERID
SVDSICKPGDAMRVKCIDIDNQGRVRLSRKAALNDDAEAGE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtacaaccaaagttgaattcgaggtcggtggaaaaaccatgaccctcgaaacc
gggctgctcgctaagcaggcagacggtgctgttacctgtggtatcggagcaaacgtcgtg
ttctccgcagtcacttccgcgaaagaagccaaagaaggcgtggattttttcccgctgcag
gtggaataccgcgaaaaattctatgcagccggccgttttccggggggctacattaaacgt
gaggcccgtccttctgagaaggaaatccttaccatgcgtgtgacagaccgtccgatccgc
acgctcttcccggacaacttccaccgcgaagtacagatcaacaacatgctgatcagctct
gaccagacgcttgataccgatgtgctgagcgtgaatgccgcttctgcggcgctgacattg
accgatctgccgtttgacggcccgatcggcgcagtccggatcgtccgtaacgatggcgaa
tggatcatcaacccgaatcatgatcagctggccgcgtctgacatagacctgacctattgt
ggatcgcgtgacaaggtgatgatgattgaaggttccgctaaggaaattcctgaagctgaa
tttattgaagccatgaaaacggcgcatgccgaagtggttaaaattatcgacggtcagctg
aagcttcgggctgaactcggtcttccggaaaaagtatacgctccggaaccgaaagacacc
acgctgctggataaagcccgtgaactcgttggtgataagttcaaagagctgatgaaaatc
agcggaaagctcgaacgtcaggatgcggttagcgccctgaaggaagagttaaaaccgcag
atgcaggatctcttcccggagatgacggaagatgaatatttccacgctttccacgatctg
gaagtggaaacggtccgtaaaaacgttcttgaagaccatacccggatcggagggcgtggt
atgttggaaatccgcccgctcgacattcaggtcggagtattcccgcaactgcatggttcg
gccgtattcggccgcggtgaaacgcagacgctctgtaccgttacgctcggaaccaccaaa
gaagcacagcgttttgacgcggtgaccggcggtgaagacgaaaagaactttatcctgcat
tacaacttccctccgtattcggtgggtgagtgcggacgcctcggcatgaccagccgtcgc
gaaatcggccatggcaaccttgcagagcgttccattgcgccggtgatgccggatgatttc
ccgtacaccgtacgtgtggtttccgaagtgatgggatccaacggctcgtcttcgatggct
tcggcctgtggcggctgcctggcattgatggatgcgggtgttccgctgaaagctccggtt
gccgggatctcggtcggtctgttcacagacggccaggataaatcggttgaagtgatcgat
attctcggtgtggaagaccactgcggtgacatggactttaaggttgtcggtacccgcaag
ggtatcaccggtttccaggtggatcttaaggttcatggtatgaactgggatcaggttgaa
gaagccttcgaaatcgcccggaaggggcgttgcgatattctcgaccagatggaggccgtg
atttcttctccgcgtcaggaactggcggctactgcaccgcgtatcaccactgttaagatt
gatccggaaaagatcggcgcccttatcggcccgggtggaaaacacatccgtgcgattact
gatggaaccggtgcccagatcgacatcgaagaagacggtacggttaacatctttgcggta
gacgccgatgcgatggaggcggcgattcgtgaagtgaatgctctgacggccgaaattgaa
atcggaagaatctacgatggtaaagtgattgccgtgaaagatttcggagcttttgttgaa
tgtatgccgggcaaagaaggtctggttcacatctccgaaatggctaatgagcgcattgat
tctgtcgattcaatctgtaagccgggcgatgcgatgcgcgttaagtgtatcgatatcgat
aaccagggccgtgtacgtctcagccgtaaagccgcgctgaacgacgatgccgaagccggc
gaataa
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