Verrucomicrobia bacterium S94: EGM51_17040
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Entry
EGM51_17040 CDS
T05990
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vbs
Verrucomicrobia bacterium S94
Pathway
vbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGM51_17040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vbs03019
]
EGM51_17040
Enzymes [BR:
vbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGM51_17040
Messenger RNA biogenesis [BR:
vbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGM51_17040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Utp25_C
ERCC3_RAD25_C
FERM_C1_MyoVII
Motif
Other DBs
NCBI-ProteinID:
QBG49022
UniProt:
A0A4P6PHU2
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All DBs
Position
3868505..3870451
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AA seq
648 aa
AA seq
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MSLLKKIASVFGKKDEPTGNKAKKQQETSSSTTDKKNKKQPEPGTVEWRPGQKPVKGKGE
GGQRKKTQRKRKEQGPKGEQPQGEKKPRPPRTPKKEIPPFELSAEEQERMKDFRPEEEDR
RIAYEKRLRQRWNEKHGIKPERPPRKKRESRGDGDRKPGRNEGERKPRDRKPKRERPADA
PYAVTAGATERRKVEDVPWDPETFKVEPAEGKIRFHDLDLHPKLMQSIHALGWKYATPIQ
GEILPGTLKGRDMAGRAQTGTGKTAAFLISIINHCLNNPLEKHSPASPRALIIAPTRELA
MQIGEDSVGLNKFTGLRTVVLYGGMDYNKQQRELEDGLVDIVVATPGRLLDFENKKVVNI
RHTEIMVIDEADRMLDMGFIPDVRRIIYKTPPKEKRQTVLFSATLSDDVMKLAAAWMVDP
ERIDIEPEQVAVDSVEQKVYIVTDDQKFTLLYNIIKNDDPDRIIIFTNRRDQAERLSEDL
DRYSIKCEMLSGAVTQKKRMRILEDFKAGKVKVLVATDVAGRGIHVDGLSHVVNFNIPEN
PDDYVHRIGRTGRAGSTGQSITFACEMESFELPKIEELLGMELKCRMPTDELLAELPPAP
PRKPRARRPQQGGQRGGRRPQGGHHKPGQKRSGSGTGHRVPRDKPESR
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
ttgagcttactcaaaaaaatcgcttccgtgttcggtaagaaggacgaaccgaccgggaac
aaagcaaagaaacaacaggaaacatcgtccagcacgactgataaaaagaataaaaagcag
cccgagcccggtaccgtcgaatggcgtcccggccagaaacccgtaaaaggaaagggtgag
ggcggtcagcgtaaaaaaacgcagcgcaaacgtaaagagcaggggcctaaaggcgaacag
ccgcagggggagaaaaaaccgcgcccgccgcgtactccgaaaaaggaaatacctccgttt
gagctgtctgccgaagagcaggaacgcatgaaggatttccgtccggaggaggaagaccgc
cggattgcgtatgaaaaacggctgagacagcgttggaacgaaaaacacggcattaagccg
gagcgcccgccgcgtaaaaaacgtgaatcgcggggggatggcgacagaaagccgggacgt
aatgagggtgagcgtaaaccgcgtgatcgtaagccgaagcgagagcgaccggcggatgct
ccttatgccgtaactgcgggagccacagaacgtcgtaaagttgaagatgttccgtgggat
ccggaaacttttaaagtggagccggcagaaggaaagatccgttttcatgatctggatctg
catccgaagctgatgcagagcattcatgcgttgggctggaaatatgcgacgccgattcag
ggcgaaattcttccgggcacgttgaagggcagggatatggccggccgggcccagaccggt
accggtaaaacggctgcgtttctgatttcgatcatcaatcactgtctgaacaatccgttg
gagaaacacagtccggcaagtccgcgggctctgatcattgcgccgacccgcgaactggcc
atgcagatcggcgaagattctgtaggtttgaataaattcaccggtctgcgcaccgtcgta
ctttacggcggcatggattacaacaagcagcagcgcgaactggaagacggactggtcgat
attgtggtggctacgccgggtcgtctgctggattttgaaaacaagaaggttgtcaatatc
cgccacacggagatcatggtgattgatgaagctgaccgtatgctcgatatgggctttatt
ccggacgtacgccgtatcatctacaagactccgccgaaagaaaagcgccagacggtgttg
ttcagtgcaacgctttcggacgatgtcatgaagctggcggcggcctggatggttgatccg
gagcggattgatattgagccggagcaggtagctgttgatagtgtggaacagaaggtctat
atcgtgactgatgatcagaaattcacactgctctacaacattatcaaaaatgatgatccc
gaccggatcattatcttcacgaaccgccgcgatcaggctgagcgtctatccgaggatctt
gatcgctacagcatcaagtgcgaaatgctgtcgggtgcggtgacgcagaaaaagcggatg
cgcattctggaagacttcaaagccggaaaagtcaaagtgctggtggctaccgatgtcgcc
ggccgcgggattcatgtggacggcctgagccacgtggtgaacttcaacattccggaaaat
ccggatgattatgtgcaccgtatcgggcgtaccggccgcgcaggatccaccggtcagtca
attacgtttgcctgtgagatggaatcgttcgaactgccgaagattgaagagctgctgggg
atggagctgaaatgccgtatgccgaccgacgagctgctggcggagcttccgccggctccg
ccgcgtaagccgcgggcccgtcgaccgcagcagggcggacagcgtggaggtcgccgaccg
cagggcggacatcacaaacccggtcagaagcgttcgggtagtggaaccgggcaccgtgtt
ccgcgtgataagccggaatccagataa
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