Vibrio campbellii ATCC BAA-1116: M892_00930
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Entry
M892_00930 CDS
T02837
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vca
Vibrio campbellii ATCC BAA-1116
Brite
KEGG Orthology (KO) [BR:
vca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vca03019
]
M892_00930
Enzymes [BR:
vca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M892_00930
Messenger RNA biogenesis [BR:
vca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M892_00930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
APHB_HrpA
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
ResIII
WHD_HA2
AAA_22
nSTAND3
T2SSE
ABC_tran
nSTAND_NTPase5
NACHT
DUF6145
SLFN-g3_helicase
PhoH
AAA_30
TsaE
Zeta_toxin
NTPase_1
NAT10_TcmA_helicase
AAA_25
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AGU93783
LinkDB
All DBs
Position
I:209077..213114
Genome browser
AA seq
1345 aa
AA seq
DB search
MKRIGNALTSSQPPKKNPAEEQATPSNGAQNAKAKKANASQAQASQNATPQAQVNNAASL
RKALNQCMMRDRFRLSKRISGASKIKKDAARNAVFDEIALDIAKSMMVVEQRSSYKPTIE
YPEILPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRR
LAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFLNQYD
TIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSKHFNNAPIIEVSGR
TYPVETRYRPLSGDDDNDRDQLEGIFEAVDELCDEGLGDILIFMNGEREIRDTADALSKR
NLKSTEIVPLYARLSAGEQNKIFQPHTGRRIVLATNVAETSLTVPGIKYVIDPGTARLSR
YSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICIRLYSEEDFESRPEFTDPEILRTNL
ASVILQMTALGLGDIQAFPFVEGPDKRNIQDGVRLLEELGAINSDAKESKKRLTSIGRQL
ARLPIDPRLARMVLESPKQGALKEVMIIAAALSIQDPRERPSDKQQSSDDKHKRFFHEES
DFLTFVNLWNYTQKQQKALTGNQFRKQCKQDYLNYLRVREWQDVYFQIHQSMREMEFKLN
DEPASYHGVHSSILVGLLSHIGMKDQEKNEYQGARNARFHIFPASGLFKKQPKWIMSAEL
VETSKLWGRIIAKIQPEWIEPLAKHLIKRSYSEPHWSKKRAAVLAHEKVMLYGVPIVPKR
LVNYGSIDPTVSRELFIRSALVEGEWETKHAFFKQNRKLLQEVEELEHKSRRRDILVDDD
ELFDFYDQRVGTEVVSGKHFDTWWKKASKDNKELLNFEKEMLFKGDASHVTDLDYPNFWY
QNNLKLKLSYQFEPGDDSDGVTVHLPLPILNQVEPAGFDWQIPGLRHELVVSLIKSLPKT
VRKNFVPAPNYADAFLARATPMEAPLLDSLEKELRRMTGVEVLREDWNMDQIPEHLKVTF
RAVDHRNRKLKENKDLHELKESLKDKVQETLSKVADDDIEQQGLHTWSFGELPKVYQQKR
GGYDVKAYPAIVDSKDSVEIKLYETEYEQVTAMQAGQRRLILLNVPSPIKYLHSNLPNKS
KLGLYFNPYGKVLDLIDDCIACGVDKLIEEQGGLVWEPEKFDALKEHVRAELGDTVVEIA
QQVETILTTAFNINKKLKGKIDFTMAFALSDIKAQVEGLIFKGFATECGWKRLPDILRYM
RAIERRMEKLPIDPNKDRLHMLKVESVTSDYKELLNKIPKGMVIPENVKEIRWMIEELRV
SFFAQQLGTPYPVSDKRVKNAIDAC
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaataggaaacgctttgacttcgtcacagcccccaaaaaagaatcccgctgaa
gagcaagcgacaccgtcaaatggtgcgcaaaatgccaaagcgaagaaggctaatgcatct
caagcacaagcttctcagaatgctacgcctcaggctcaagtaaataacgcggcgtcacta
cgcaaggcacttaaccagtgcatgatgcgtgaccgcttccgcttgagtaaacgaatctct
ggtgcaagtaaaatcaaaaaagacgcagcacgtaacgctgtgtttgatgaaatcgcatta
gacatcgccaaatccatgatggttgtggagcaacgcagtagctacaaaccgacgattgaa
taccctgaaatccttccagtcagccaaaaacgcgacgacattgcgaaagcgatcgaagaa
aaccaagtggtaatcgttgcgggtgagacaggttcaggtaaaaccactcagctaccaaaa
atctgtgctgagcttggtcgcggtaaattcggtctgattggtcacactcagcctcgtcgt
cttgcggcgcgttcggttgcaaaccgtattgccgaagagatggaaaccaagcttggtgag
tttgttggttacaaggttcgattcaacgatcagatctctgaaaatacccaaatcaaattg
atgacggacggtatcttgctggctgaaattcagcatgaccgcttcttgaaccaatacgac
accatcattatcgatgaagcgcacgagcgcagtcttaacatcgatttcatcttgggttac
ttgaaagagttgctaccacgtcgtcctgatctgaaagtgatcatcacatcggcaaccatc
gaccctgagcgtttttcaaaacacttcaacaacgcaccaatcattgaagtgtcaggtcgt
acttacccagtagaaacgcgttaccgcccactaagtggtgatgacgataatgatcgtgac
caacttgaaggtatcttcgaagcggtagacgaactgtgcgatgaaggtttaggtgacatc
ctgatcttcatgaacggtgagcgtgaaatccgtgataccgctgacgcactgtctaaacgt
aatctgaagagcacggaaattgtgccgctttacgcgcgtttgtcggcgggtgaacagaac
aagatcttccaacctcatactggtcgccgcattgtactggcaaccaacgtagcagaaacc
tcgttgacggttccgggcatcaaatacgtgatcgatccgggtacggcacgtctcagccga
tacagttaccgtactaaagttcagcgtctaccaatcgagccagtttctcaggcgagtgcg
aaccagcgtaaaggtcgttgtggtcgtgtggaagagggtatctgtatccgtctgtactca
gaggaagattttgagtcacgtccggagtttaccgatcctgagatcctgcgtaccaaccta
gcgtcggttatcttacagatgacggcacttggtctgggcgacattcaagccttcccattt
gtagaagggcctgacaaacgtaacattcaagacggtgttcgccttctagaagagttgggt
gcaatcaattctgatgcgaaagaatcgaagaaacgcctaaccagcattggtcgtcaactt
gcacgtcttccaatcgacccacgtttagcacgtatggtattggaatcaccaaagcaaggt
gcgttgaaagaagtgatgatcatcgctgcggcattgtcgattcaagacccgcgtgagcgt
ccaagtgacaagcagcaatcttcagatgacaagcacaaacgtttcttccatgaagagtca
gattttctgacgtttgtgaacctgtggaattacacacagaagcagcaaaaagcgctaacg
ggtaaccagttccgcaagcaatgtaaacaagattacttgaactacttacgcgtgcgtgag
tggcaagatgtgtacttccaaattcatcagtcgatgcgtgaaatggaattcaaacttaac
gatgagcctgcgtcgtaccatggcgtacacagctcaatccttgttggtttgttgtcgcac
atcggtatgaaagaccaagagaagaatgaataccaaggcgcgcgtaacgctcgtttccat
atcttccctgcatcgggtctattcaagaaacaacctaagtggatcatgtctgctgaactg
gtggaaacctcaaaactttggggccgtatcatcgcgaagattcaaccagagtggattgaa
ccgttagcgaagcacctaattaagcgcagctacagcgagccgcattggtcgaagaaacgt
gcagcagttttggcgcacgagaaagtgatgctttacggtgtgccaattgtaccgaagcgt
ttggtgaactacggcagtatcgatcctactgtaagtcgtgagctattcattcgtagcgcg
ctagtggaaggcgagtgggaaaccaaacacgcgttctttaagcaaaaccgtaagcttctt
caagaagtggaagaacttgaacacaagtcgcgtcgtcgtgacatcttggtggatgacgat
gagctgtttgatttctacgaccaacgcgttggcactgaagtggtctctggcaaacacttc
gatacgtggtggaagaaagcatcaaaagataacaaagaactgctgaactttgaaaaagag
atgctgttcaagggcgatgcaagccacgttactgatttggattacccgaacttctggtac
caaaacaacctgaaactcaagttgagctaccagtttgaaccgggtgatgatagtgacggt
gtaacggtgcatttgccgttgccgatcttgaaccaagttgagcctgcgggttttgactgg
cagatcccaggtttacgccatgagcttgtggtgagtttgattaaatcgctgccgaagaca
gtgcgtaagaactttgttcctgcaccaaactacgccgatgccttcttagctcgtgcaacg
ccgatggaagcgccactactggactcattagagaaagagttgcgtcgtatgacgggtgtg
gaagttcttcgcgaagattggaatatggatcaaattccggagcacttgaaggtgactttc
cgcgcggttgaccatagaaatcgcaagttgaaggaaaataaagaccttcatgaattgaaa
gagagcttgaaagataaagttcaagaaactctttcaaaagtagcggatgacgacattgag
caacaaggtctgcacacgtggagctttggtgagttgccgaaggtataccaacaaaaacgc
ggcggttacgacgttaaagcgtacccggcgattgtggattctaaagacagtgttgaaatc
aaactgtacgagaccgaatacgagcaggtcacggcaatgcaagcgggtcagcgtcgtctg
attttgctgaacgtgccgtcgccaatcaaatacctgcactctaacttgccgaacaagtcg
aagttggggctgtactttaacccatacggcaaggtgctggacctgattgatgactgtatc
gcgtgtggtgtcgataagcttattgaagagcagggcggtttggtttgggagccagagaag
tttgacgcgctgaaagaacacgttcgtgctgaacttggtgataccgtggtggaaattgcg
cagcaagtggaaaccattctgacgaccgctttcaacatcaataagaagttgaaaggcaag
atcgacttcaccatggcgtttgcactatcggacatcaaagcacaagtcgaaggattgatc
ttcaaaggcttcgcgacagaatgtggttggaaacgtctgccagatattctgcgttacatg
cgtgcgattgagcgtcgtatggagaagctgccgatcgatccaaacaaagaccgtttacac
atgctgaaagtggaatcagtgacgagcgactacaaagagctgctcaacaaaattccgaaa
ggcatggtgattccagagaacgtgaaagagattcgttggatgatcgaagagcttcgcgtg
agcttttttgctcaacaattgggcactccgtacccagtttctgataaacgtgtcaaaaat
gcgattgatgcttgctaa
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