Vibrio campbellii ATCC BAA-1116: M892_05255
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Entry
M892_05255 CDS
T02837
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vca
Vibrio campbellii ATCC BAA-1116
Brite
KEGG Orthology (KO) [BR:
vca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vca03032
]
M892_05255
03400 DNA repair and recombination proteins [BR:
vca03400
]
M892_05255
Enzymes [BR:
vca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
M892_05255
DNA replication proteins [BR:
vca03032
]
Prokaryotic type
DNA Topoisomerases
M892_05255
DNA repair and recombination proteins [BR:
vca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
M892_05255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AGU94205
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Position
I:complement(1143442..1146072)
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGEKKAAAISTKGMSPE
EKARVKKEKDRKALIKKMGINPYHDWDANYQILPGKEKVVSELQKLAKDADYVYLATDLD
REGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFIPEEFWDINANTHTKDKTA
FKLLVAQKDGVAFKPVNEAETKAALSVLEKASYEVCKREDRPTKSKPSAPYITSTLQQAA
STRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRGFIGSEYGDKYLPAKPL
TYGSKEGAQEAHEAIRPSDVSVKSEDLQGVDADAHKLYSLIWNQFVACQMTPAEYDSTTI
SVKAAEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGEKLDLESLEPKQHFTKPP
ARFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVTDRLDDSF
NDLMNYDFTARMEQKLDQIAEGDVMWKDVLDNFFTDFTGDLEKAEQDENEGGMKLNHIVM
TDIECPTCGRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEDGIINVLEEDVETAA
LRAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYIVEHGEFKVKGYDGPVVECDKCG
SDMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDG
ASGLFMAASNFPKSRETRAPLVSELARFEERLPEKFKYLTTAPAADPDGRPAVVRFSRKS
KENYVRTEDNGKPSGWTALFVDGKWEITDKRKKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctcgttatagtggagtcaccagccaaggctaagacgataaataaatat
cttggtaaagactttattgttaagtctagtgttggtcacgtgcgtgatctgcctacggcc
ggtcaaagcactggtgagaaaaaagccgctgccatttctacaaaaggaatgagcccggaa
gagaaagcgcgtgtcaaaaaagaaaaagaccgcaaagcgctaatcaaaaaaatggggatt
aacccatatcatgactgggatgcgaattaccaaatccttccaggcaaagaaaaagtcgta
agcgaactgcaaaaattagccaaagacgctgattacgtttacctcgcaaccgatttggac
cgcgagggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcga
tacaagcgcgtagtgtttaacgagatcactaagaatgctatccaacaagctttccagaca
cctggcgagctaaacatggacggtgttaacgcacagcaagcacgtcgattcatggaccga
gtagtaggtttcatggtttctccattgctatggaagaaagttgcgcgtggtctttcagca
ggtcgcgtacaatcagtagcggtgaagctattggttgagcgtgagcgtgaaatcaacgct
ttcattccagaagagttctgggatatcaacgcgaatacgcacaccaaagacaagaccgca
ttcaaattgcttgttgcacaaaaagatggcgttgcgtttaagccagtcaacgaggcagag
accaaagcagcgctttcggtactggaaaaagcgagctacgaagtttgtaagcgtgaagac
cgcccaacaaagagtaagccttctgcaccgtacatcacttcaacactgcaacaagcggca
agcactcgtcttggctacggcgttaagaagacaatgatgctcgctcaacgtttgtatgaa
gcgggttacatcacctatatgcgtaccgactctaccaacttgagtgcggaagctgtagat
gcggttcgtggattcatcggctctgagtatggtgacaagtatcttcctgctaaaccgcta
acatacggtagcaaagagggcgcacaagaagcgcacgaagcgattcgtccttccgatgtt
tctgtgaaatcagaagatctacaaggtgttgatgcggacgcacacaaactttactcattg
atctggaatcagttcgttgcttgtcaaatgacgccagcagaatacgattcaacaacaatc
agtgtgaaagcggcagaatacacgctaaaagcgaaaggccgtatccttaagtttgacggt
tggactcgcgtacaacgcccaatgggtaaaaacgaagatacgattcttccagctgttcag
ctaggcgaaaagctagacttagagtcattagagcctaaacagcactttactaagccacct
gcacgttttacagaagcggcattggttaaagagcttgagaagcgcggcattggccgtcct
tcaacttacgcttcaatcatctctacgatccaagatcgcggttacgtgaaagttgaacag
cgtcgtttctatgcagaaaagatgggcgagatcgttactgaccgcctagatgacagcttt
aacgacctaatgaactacgacttcacggctcgtatggaacagaagcttgaccaaatcgca
gaaggcgatgtgatgtggaaagatgttctagacaacttcttcacagacttcactggcgat
cttgagaaagcggaacaggacgaaaacgaaggcggcatgaaactgaatcacattgtgatg
acagatattgagtgtccaacttgtggtcgtccaatgggtattcgtactgcgtctaccggt
gtgttccttggctgttctggttacgcattgccacctaaagagcgttgtaagacaacgatt
aacttaggtgacgaagatggcattatcaatgttctagaagaagatgtggaaactgcagca
ctgcgtgcgaagaagcgttgtcctatctgtgaaacagcgatggatgcatacctgatcgac
gataagcgtaagatgcacgtttgtggtaacaacccgaactgtgaaggctacatcgttgaa
cacggcgagttcaaagtgaaaggctacgatggcccagttgttgagtgtgacaagtgtggt
tctgacatggtgcttaaaaacggtcgcttcggtaaatacatggactgtacgagtgagacg
tgtaagaacactcgtaagattctgaagaatggcgaagttgcgccaccgaaggaagaccca
gttcatttccctgaactgccatgtgaaaactcggacgcttactttgttctgcgtgatggt
gcttctggcctatttatggcagcaagcaacttccctaaatcacgtgaaactcgtgctccg
ttggtgtctgaactggctcgcttcgaagaacgtcttccggagaagtttaagtacctaacg
acagcgccagcagcggatccagatggtcgccctgcagtggttcgctttagccgtaagagc
aaagaaaactacgtgcgtactgaagacaatggcaaaccaagtggttggactgcgttgttt
gttgacggtaagtgggaaatcacagataagcgcaaaaaagcaaaagcttaa
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