Vibrio campbellii ATCC BAA-1116: M892_06135
Help
Entry
M892_06135 CDS
T02837
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vca
Vibrio campbellii ATCC BAA-1116
Brite
KEGG Orthology (KO) [BR:
vca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vca03016
]
M892_06135
Enzymes [BR:
vca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
M892_06135
Transfer RNA biogenesis [BR:
vca03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M892_06135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AGU94310
LinkDB
All DBs
Position
I:complement(1330309..1331457)
Genome browser
AA seq
382 aa
AA seq
DB search
MLAFFYSEKHVNYQIITKNKDLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGK
QLSLIDPTELTDMTSFVELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL
GHGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKV
NEAGWWEAVQQESDLLVSKRIRNVNEENAYLDIKGAWQLRPTELAILKPLATWRYREAIK
RDLALNFIFKEGDLLTVARLGLTGFKKMEAEGIDIRAINRHGARIAGIVKQAKQTPADDY
PAKIERLMDYPGYKQIFKNMKDVVKVASQKSGLATEFLASKKQINQIISWVWKKDRDPAR
LPDVMQGWRLELLGEKMNKVLK
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
ttgctggcatttttttatagcgagaagcatgtgaactatcagatcattacgaaaaacaaa
gacctagaagaagtctgcgctctagcaagagaagccgacgtagttatgctggataccgaa
ttcgtgcgaatcaggacttactatccgcaactaggtttgattcagcttttcgatggcaaa
caactttcccttatcgacccgaccgaactgactgacatgacgtcgttcgtcgagttgcta
aaagacacatctgtactaaaagtactgcatgcgtgtggtgaagatctagaagtcttccaa
aatgcctttggctgcacaccattcccaatggtggatacccaattgatggcggcattcttg
ggtcacggcctgtcgacaggctttgcaacgctggtagaagaatatcttggcgtggagcta
gacaagagcgaatctcgcactgattggatggcgcgtccactgactcaaaagcagcttgat
tacgccgcggccgacgtgcactacctaatgcctctttacgagaagctattagataaagtg
aacgaagcaggctggtgggaagcggttcagcaagagagcgacttactggtatcaaagcgt
attcgcaacgtgaacgaagaaaacgcctacctagacatcaaaggcgcatggcagctaaga
ccgactgaacttgcgattcttaagccattggcaacttggcgttaccgcgaagcgattaag
cgtgacctagcgttgaacttcatcttcaaagaaggcgacctgttgacggtggctcgtctt
ggtttgactggctttaagaagatggaagcggaaggcatcgacattcgtgcgattaaccgc
cacggtgcacgaattgcgggtattgtgaagcaagcgaaacaaacaccagccgatgactac
ccagcaaaaatcgaacgtttgatggattacccaggctacaagcaaatcttcaagaacatg
aaggatgtggtgaaggtagcgtcgcaaaaatcaggcttggcaaccgagttcttggcttct
aaaaagcagatcaaccaaatcatcagttgggtatggaagaaagaccgcgacccagcgcgt
ctgccggatgtgatgcaaggctggcgtcttgagttactcggcgagaagatgaataaggtg
ctgaagtaa
DBGET
integrated database retrieval system
