Vibrio campbellii ATCC BAA-1116: M892_09960
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Entry
M892_09960 CDS
T02837
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vca
Vibrio campbellii ATCC BAA-1116
Pathway
vca03030
DNA replication
vca03410
Base excision repair
vca03420
Nucleotide excision repair
vca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M892_09960
03410 Base excision repair
M892_09960
03420 Nucleotide excision repair
M892_09960
03440 Homologous recombination
M892_09960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vca03032
]
M892_09960
03400 DNA repair and recombination proteins [BR:
vca03400
]
M892_09960
Enzymes [BR:
vca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M892_09960
DNA replication proteins [BR:
vca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M892_09960
DNA repair and recombination proteins [BR:
vca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
M892_09960
NER (nucleotide excision repair)
GGR (global genome repair) factors
M892_09960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AGU94877
LinkDB
All DBs
Position
I:complement(2166966..2169758)
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AA seq
930 aa
AA seq
DB search
MASIPENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAV
VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT
LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK
DNAMLSYELATIKLDVELEETPESLLKAEPSTDELIKLYGQLTFKSWLNELLEGGTGVVE
ADESTGAARGGSAASKADMDTSAVKIDRSQYETILDEASFNAWLDKLKASELFAFDTETD
SLDYMVANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQLKPILEDEAQAKVGQ
NLKYDASVLARYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGK
GKNQLTFNQIDLDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSR
IERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVI
NKTPSGTPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY
HQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSG
DQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGI
PRGEAQAYMDKYFERYPGVMQYMEDTRSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAA
ERAAINAPMQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIES
KVQNLMESAAELKVPLVAEAGHGDNWDQAH
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtattcctgaaaatccgttgattctgatcgacggctcttcttatctatatcgc
gcttttcacgcttacccaggcacgatgagtaacggtgaaattccaactaacgcagtttac
ggtgtagtaaacatgttacgcagcatgatgcgtcagtttgcttctgatcgtatcgcagta
gttttcgatgcgaagggtaaaaccttccgtgacgatatgtacccggaatacaaagcgaat
cgtccaccaatgccggatgatcttcgttgccagattgaacctctgcataacgttattcgt
gctatgggcctgccattgatctgtattccaggtgtagaagccgatgacgtgattggtact
ctggcttatcaagcatcgcagcaaggcatgcctgttttgatcagtactggcgataaagat
atggcgcagctggtggatgacaacgttaccttgatcaacaccatgaccaacgtcgtgatg
gatcgtgaaggtgtggttgagaagtttggtatcccaccagaattgatcatcgactaccta
gcgttgatgggcgataaagtcgataacattcctggtgttccgggcgtgggtgataaaacc
gcaactgctctgctacaaggtattggcggtctgacaaagctgtatgaaaacctcgatgat
attgcagcgcttggcttccgtggttcaaaaaccatggcgaagaagctagtcgataacaaa
gacaacgcaatgctgtcttacgagcttgcgaccatcaagctggatgtggaactggaagag
acgccagaatcattgctaaaagcagaaccaagcaccgatgagctgatcaaactgtacggt
cagttgacgttcaagtcttggttgaacgagctattagaaggcggtacaggcgtggttgaa
gcggatgaatcaactggcgcagcgcgtggtggttctgctgcatctaaagctgatatggat
acttcagcggtaaaaatagaccgtagccaatacgaaaccatcctagatgaagcttcattc
aatgcttggttagacaaactaaaagcatcggagttattcgcgtttgataccgaaactgac
agcctagattacatggtggcaaacttggttggtttgtcatttgcaactgacgaaggcatt
gctgcttatgtaccagtggcccacgactacctagatgcgccgcagcagctggatcgtgat
tgggtactggcacagctaaagccgattcttgaagatgaggctcaggcgaaagttggtcaa
aacctaaaatacgatgcatctgtgctggctcgctacggcatcgagatgaaaggcatcaag
catgacaccatgttggcgtcttacgtctacaacagtgtaggcggcaagcatgatatggat
agcttggcactgcgcttcctacagcacagctgcatttcattcgagcaaatcgcaggtaaa
ggtaaaaaccaactgaccttcaaccaaatcgatctggatgaagcttcaccatatgctgca
gaagatgcagacgtgacacttcgtctgcataaccgtttgtttgctaacatcgaacaagat
gaaaagctaaaaactgtatacgaagaaatcgaaatgccacttgtgcccgtgctgtctcgc
attgagcgtactggtgtattgattgatgacatgaagcttagcgcgcaatctgtagaaatt
gctgcacgtctggacgagcttgagcaaaaggcgtacgagattgcagaacaagagttcaac
atgaattctccgaagcaactgcaagcgcttctgtttgagaaaatgggtctaccagttatc
aataagacgccatctggcacgccttctactaatgaagaagtgctgcaagagctggctctg
gattacccactaccaaaactgattttggaataccgtggtctggcgaagctaaaatcaacc
tacaccgacaaactcccgaagatgatcaacccatcaacgggtcgtgtgcatacttcttac
caccaagcggtgaccgcaacgggtcgtctatcatccaccgatcctaacttgcagaacatc
ccaattcgtaatgaagaaggtcgtcgtattcgtcaggcattcgttgcccctacgggttac
aagattctggcagtcgactactctcaaatcgaattgcgtattatggcgcacctatcaggt
gaccaagcactgcttgatgcgttccgtgacggtaaagatatccacgcggcaaccgcagca
gaaatcatgggcgtttctattgaagacgtttcaagtgagcaacgtcgccgtgcgaaagcg
gttaacttcggtcttatctacggcatgagtgcgtttggtttggcgaagcaactgggcatt
cctcgtggtgaggcacaagcgtacatggacaagtatttcgagcgctacccaggcgtaatg
cagtacatggaagacacgcgcagtgcggcttcagagcaaggtttcgtcgagacaatcttt
ggtcgtcgcttgcaccttcctgaaattcaatctcgcaacggcatgcgtcgtaaggcggca
gagcgtgcagcgatcaacgcgccgatgcaaggcaccgctgcggacatcatcaagaaagcg
atgctgttagttgatcagtggattcaagaagaaggcaatggtcgagtgaaacttctgatg
caagtacacgatgaactggtgtttgaagttgaagagtcgtctttgtccgaaattgaaagt
aaagtacagaatttgatggaatctgcagcagagctaaaagtgcctctagtggcagaagcg
ggtcacggtgacaactgggatcaagcacactag
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