Vibrio campbellii ATCC BAA-1116: M892_11035
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Entry
M892_11035 CDS
T02837
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vca
Vibrio campbellii ATCC BAA-1116
Pathway
vca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M892_11035 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vca03021
]
M892_11035 (rho)
03019 Messenger RNA biogenesis [BR:
vca03019
]
M892_11035 (rho)
Transcription machinery [BR:
vca03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M892_11035 (rho)
Messenger RNA biogenesis [BR:
vca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M892_11035 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
AAA
S1CSD-TOTE-2
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AGU95018
LinkDB
All DBs
Position
I:2399907..2401166
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AA seq
419 aa
AA seq
DB search
MNLTELKNRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVN
DDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMEIHLNRKIAEKRVFPAIDF
NRSGTRREELLTKNEELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttactgaactgaagaacagacctgtgtctgaccttgtaaagcttggcgaaagc
ctgggtcttgagaacctagctcgtctaagaaaacaagacatcatcttcgcaattcttaaa
gcgcacgcgaaaggcggcgaagacatctttggcgatggggttctggagattctgcaagac
ggctttggtttcctacgtagcgcggacagctcataccttgctggtccagacgacatctac
gtttcgccaagtcagattcgtcgcttcaacctacgtactggtgactcaattgctggtaaa
attcgcccaccaaaagacggtgagcgttactttgctctgctaaaagtcaacacagtaaac
gacgacaaaccagacaacgctcgtaacaagatcctattcgagaacttaacgcctctacac
gctaacgagcgtatggttatggagcgcggtaacggttctacagaagacatcacagcacgt
gttttagacttggcatcgccaattggtaaaggtcaacgtggtctgattgttgctccgcct
aaagcgggtaagacaatgcttctgcaaaacatcgctcaaagcatcgcatacaaccaccca
gagtgtgagttgatggtacttcttatcgacgaacgtcctgaagaagtaacagagatgcag
cgtctagttaaaggtgaagtagtagcgtcaacgttcgatgagccagcttctcgtcacgta
caagtagcggaaatggtaatcgagaaagcaaaacgtcttgttgaacacaagaaagacgtg
gttatcctgcttgactctatcactcgtctagctcgtgcatacaacactgtagtgccttca
tcaggtaaagtactaactggtggtgtggatgcaaacgcactacaccgtcctaagcgtttc
ttcggtgctgcgcgtaacgtagaagaaggcggcagcctaactatccttgctacggctcta
gtcgatactggttctaagatggacgaagttatctacgaagaattcaagggtacaggtaac
atggaaatccacttgaaccgtaagattgcagagaaacgtgtattccctgcgattgacttc
aaccgcagtggcacacgtcgtgaagagcttctaactaagaacgaagaacttcagaagatg
tggattctacgtaagatcgttcacccaatgggcgaaactgacgcgatggagttcctaatc
gacaagctagcgatgacgaagaccaacgacgagttcttcgatgcaatgcgtcgtcaatag
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