Vibrio campbellii ATCC BAA-1116: M892_12690
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Entry
M892_12690 CDS
T02837
Name
(GenBank) MSHA biogenesis protein MshH/regulatory protein CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
vca
Vibrio campbellii ATCC BAA-1116
Brite
KEGG Orthology (KO) [BR:
vca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vca03019
]
M892_12690
Messenger RNA biogenesis [BR:
vca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M892_12690
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
AGU95238
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All DBs
Position
I:2742367..2744397
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AA seq
676 aa
AA seq
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MRYTPTLKLSTRLVAFVTMIVICAMFILFVGGTLSFKRLGQEYLNHYLEGIVEVVDKEME
DPDAAYSMQRWMPKMLQASNIVEMTLSTNNAVVYRFKDTSHKMDSSVLFEHEYQLTHNQD
YVIYFKAIPPYLGYGYSMQALWSITLAVVLIIFCLMRGVKWLKEQLAGSEMLEERGRMIL
AGRVEQYAKGDEREWPYTASEALDVLIEELQDARQERSRFDTFIRTQTFLDKLTGTANRV
LFDSKLESALLESGARGSVMLIRIQDWKSVEEEQDKQTCDEFIVEVGSLLSNLVQRYPDV
VFSRYYNADFALFLPHQSGKDVANLASQCIRQLEKLHPPYPLDADNWCHIGITMYKEGER
HSQIIDEAETALRSAQLQNNNNWSRFKKWNHDEEARGSVRWRTLFDSALTAENVILYAQS
AYLISDVAHKKPLHEELTCRIRDPENGIVKASRFISAVRQVGYEAQMDRAVVNKFLKDFK
HSFDSSKCYVLNLHVVPFGQREYFKWFRDELLQLSREQRKCLTFEFVEAQFVRHLDFMRP
VAKMLAGLECHVMIGQAGRTIVSTHYLKEVDIRYLKLHRSLVTKIDQRHENQLFVRSMLG
AAANSKTKIIAVGIENKHELNTLNELGVHGGQGRYFSPEEQYLPRSKPTIISQADSQVKL
GRRNRWRKNKDNNHGF
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaggtataccccaactcttaagctaagcacgcggctggtggcctttgtcactatgatc
gttatatgcgcaatgtttatcttgtttgtcggtggcaccctctctttcaaacgactagga
caagagtatctcaaccattatttggaagggatcgttgaagtagttgataaagagatggaa
gacccagacgcagcctattcgatgcagcgctggatgccgaagatgctgcaggcgagtaac
attgtcgaaatgacgttgtcgacgaataacgccgttgtttaccgtttcaaagatacttct
cataagatggatagctcggtgttgtttgagcatgagtaccaactcactcacaaccaagac
tacgtcatctattttaaagcgatccctccttatttaggctacggctactcgatgcaggca
ttgtggtcaatcacgcttgccgtcgttctgatcattttctgtttgatgcgcggtgttaag
tggctcaaagaacagcttgcaggatcggaaatgctcgaagagcgtggacgaatgatttta
gcgggccgagtcgagcaatacgcaaaaggtgatgagcgagaatggccttatacggccagt
gaggcattagatgtattgatcgaagaacttcaagatgctcgccaagaacgcagtcgcttc
gatacctttatccgtacgcaaactttcctcgataaattgactggcacggccaaccgagtg
ttgtttgacagcaagcttgaatctgctttgttggaaagtggtgcacgtggctcagtgatg
ctgatccgcattcaagattggaaatccgttgaagaagagcaagataagcaaacttgcgac
gagtttattgtcgaagtgggtagtttgctttcaaacttagttcagcgttatcccgatgtc
gtgttctcacgctactacaatgcagactttgcattatttttgcctcatcaatcgggcaag
gacgtggcgaatttagcttctcaatgtattcgccagctagaaaaactccaccctccttat
ccgttggatgctgacaattggtgccatatcggtatcactatgtacaaagagggtgaacgt
catagtcaaatcattgatgaagcagagacggcattacgcagtgcccagttgcaaaataac
aacaactggagccgctttaagaagtggaatcacgacgaggaagcacgaggcagtgtgaga
tggcgtacgctatttgattcagcactcacagctgaaaatgtgatactctacgcacaatcc
gcctatctaataagtgatgtggcgcataaaaaacctttgcacgaagagttaacatgtcgg
attcgtgatccggaaaatggcattgttaaagcttctcgctttatttctgccgttcgacaa
gtcggttatgaagcgcagatggaccgcgcagtggttaataaattcttaaaagactttaaa
catagctttgatagctctaaatgctatgtacttaacttacatgttgtgccttttgggcaa
cgagaatatttcaaatggttccgtgatgaactcttacagttgtcacgagagcaaagaaag
tgtctcacttttgagtttgtcgaagcacaatttgtaagacacttagactttatgcgacca
gtcgctaaaatgctggccggtttagagtgtcacgtcatgattgggcaagctggacgcacg
atcgtcagtacccattatctaaaagaagtggacattcgttaccttaagctccatcgcagt
ttggtaactaaaatcgatcagagacatgagaaccagttgtttgtccgcagtatgttgggt
gcggccgcaaacagcaaaacaaaaataatagcagtgggaattgagaataagcacgaattg
aacaccctgaacgaattaggggttcatggcgggcagggacgttatttctctccagaagag
cagtatctacctagatccaagccaaccattatttctcaagcggactctcaagtgaaattg
ggacgacgaaatcgctggcgaaaaaataaagataataatcatggattttaa
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