Vibrio campbellii ATCC BAA-1116: M892_12880
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Entry
M892_12880 CDS
T02837
Name
(GenBank) RNA polymerase, sigma-54 subunit RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
vca
Vibrio campbellii ATCC BAA-1116
Pathway
vca02020
Two-component system
vca02040
Flagellar assembly
vca05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vca00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
M892_12880
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
M892_12880
09142 Cell motility
02040 Flagellar assembly
M892_12880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vca03021
]
M892_12880
Transcription machinery [BR:
vca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
M892_12880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
IPPT
Motif
Other DBs
NCBI-ProteinID:
AGU95268
LinkDB
All DBs
Position
I:complement(2788625..2790100)
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AA seq
491 aa
AA seq
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MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGHDEPQANG
EDKSASESADKSANEANDASEPDLPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLA
LDDDMPVYQGETTESLHDYLMWQLDLTPFSETDRTIALAIIDAVDDYGYLTLSPEEIHES
FDNEEVELDEVEAVRKRIQQFDPLGVASRNLQECLLLQLATFPEDTPWLAEAKMVLSDHI
DHLGNRDYKLVIKEAKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDHGK
WTVSINPDSIPKLKVNQQYAQLGKGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVARC
IVEHQQDFFEYGEEAMKPMVLNDVALDVDMHESTISRVTTQKFMHTPRGIFELKYFFSSH
VSTDNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLG
IAPSSQRKRLL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttcattacaactcaagctaggtcaacagttagccatgacgccacagctgcag
caagcgattcgtttgttgcaattgtcgacgctcgatcttcaacaagaaatccaagaagcg
ttggactccaacccgctactggaagttgaagaaggccacgatgagcctcaagcaaatggt
gaagacaaatcagcgtctgaatctgctgataaaagtgcgaacgaagctaacgatgcctca
gaacccgaccttccagatagctcagacgtgattgaaaaatctgaaatcagctctgagcta
gaaattgataccacttgggatgacgtatatagcgcaaacacgggcagcacaggcctagcg
ctggatgatgacatgcccgtctaccaaggtgagaccactgaatctttgcatgattacctt
atgtggcagttagacttaacgcctttcagtgaaaccgaccgcaccatcgccctcgcgatt
atcgatgcggtcgacgactacggctacttaaccctatcccctgaagaaattcacgagagc
ttcgacaacgaagaagtggaattggatgaagtagaagcggtacgtaagcgtattcagcaa
tttgacccgctcggtgtagcctctcgcaatctgcaagaatgcctactgctacaactggca
actttccctgaagacacgccgtggcttgctgaggcgaaaatggtgttgagcgatcacatc
gaccaccttggcaatcgtgactacaagctggtcatcaaagaggctaagcttaaagaagcg
gacttgcgtgaagtattgaagttgattcaacaacttgacccacgtccaggtagtcgtatc
acacccgatgacactgaatacgtcattccggatgtgtccgtatttaaagatcatggtaag
tggaccgtctccataaaccctgacagcattccgaaactaaaagtaaatcaacaatatgcg
caactaggcaaaggcaacagtgcggatagccagtacattcgcagcaatttgcaagaggca
aaatggctgattaagagcctagaaagcagaaacgagacgcttctcaaagttgcaagatgt
attgttgaacatcaacaagatttcttcgagtatggtgaagaagccatgaaaccaatggtg
ctaaacgacgtagcattggatgtggacatgcatgaatcgacaatttctcgtgtaacaaca
cagaagtttatgcataccccacgtggcatttttgaattgaagtacttcttctctagccat
gttagtacagacaatggtggagagtgttcgtccacagcaattcgcgcactcatcaaaaag
ttggtcgcagcggagaataccgctaagccactgagtgatagcaaaattgctgctcttctg
gctgaccaggggattcaagtcgcgagacggacgatagcaaaatatcgtgaatccttgggt
attgccccttcgagtcagcgtaaacgcctactttag
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