Vibrio campbellii ATCC BAA-1116: M892_14130
Help
Entry
M892_14130 CDS
T02837
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vca
Vibrio campbellii ATCC BAA-1116
Pathway
vca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M892_14130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vca03019
]
M892_14130
03016 Transfer RNA biogenesis [BR:
vca03016
]
M892_14130
Enzymes [BR:
vca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
M892_14130
Messenger RNA biogenesis [BR:
vca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M892_14130
Transfer RNA biogenesis [BR:
vca03016
]
Prokaryotic type
tRNA degradation factors
M892_14130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
KH-I_KHDC4-BBP
DUF3016
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AGU95451
LinkDB
All DBs
Position
I:3047877..3050009
Genome browser
AA seq
710 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS
VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV
AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPAEN
TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ
RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV
EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEANDASEAKGE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaaaccagttgttaaaacgttccagtacggtaaccacacagttactctagaa
actggcgttatcgcacgtcaagctacggctgcagtaatggttactatggacgatacagca
gtattcgtttctgtagtcggtaaaaaagaagcggttgaaggtcaagacttcttccctcta
acagttaactaccaagagcgtacttacgcagcaggtaaaatcccaggtggtttcttcaag
cgtgaaggtcgtccttctgaaggtgaaacgctaacggctcgtctaatcgaccgtccaatc
cgtccactattcccagatgcattcaaaaacgaagtacaagttattgcaacagtagtatct
gtgaacccagacgttcaaccagacatcccaacaatgattggtacgtctgctgcgctagct
atctctggtattccgttcaacggtcctatcggtgctgcgcgtgttggtcacatcgacggt
caactagtacttaacccaagcaacactgaactagaagcatctaagctagacctagttgtt
gcgggtactgaatctgcagtactaatggttgaatcagaagctgacaacctaactgaagaa
gaaatgctatctgctgttgtattcggtcacgatcaacaacaagctgtgatcaaagcaatc
aacgaattcaaagctgaagttgctactcctgcttgggattgggttgctccagcagagaac
actgcgctggtaactaagattgctgaacttgctgaagcaaaactggttgaagcttaccaa
atcactgagaagatggctcgttacgaccgcatccacgagatcgctggtgaagttaacgaa
gtgctgcttgctgaagatccagaagcaaacacaaaagaaatccacactatcttccacgat
ctagagaagacagtggtacgtcgcagcatcatcgctggtaacccacgtatcgacggtcgt
gaaaaagacatggttcgtgcgcttgacgtacgtactggtgttcttcctcgtactcacggt
tcttcactatttactcgtggtgaaactcaggcgctagtaactgcgactctaggtacgcag
cgtgacgctcaaatcattgatgagctaacaggtgagcgtaaagatcacttcctactgcac
tacaacttccctccatactgtgttggtgaaactggttttgtaggttctcctaagcgtcgt
gaaatcggtcacggtaaactggctaaacgcggtatcgcagcagtaatgccttctgttgat
gagttcccatacacagtacgtgttgtatcggaaatcactgaatctaacggttcttcttca
atggcttctgtatgtggtacttctcttgctcttatggacgcaggtgtgccaatcaagtct
tctgttgcgggtatcgcaatgggtcttgttaaagaaggcgacgacttcgttgttctttct
gacatccttggtgacgaagaccacctaggtgacatggactttaaagtagcaggtactaac
actggtatcactgcacttcaaatggacatcaagatcgaaggtatcactaaagagatcatg
caaattgcgcttaaccaagctcaaggtgcacgtaagcacatcctatctgtaatggatgaa
gctatctctggtgctcgtgaagacatctctgaattcgctcctcgcattcacacaatgaag
atcagcgcagagaagatcaaagacgttatcggtaaaggtggtgcagttatccgtgctcta
actgaagagactggtacaactatcgaaatcgaagacgacggtactatcaagattgcagca
actgaaggtgcagcagcgaaagaagctatccgccgtatcgaagagatcactgctgaagtt
gaagtaggtcgtatctacactggtaaagttgcacgtctagctgactttggtgcattcgta
acggttcttccaggtaaagatggtctagtacacatctctcaaatcgctgaaaaacgcgtt
gagaaagtgtctgactacctaactgaaggtcaagaagttcaagttaaagttcttgaaatt
gatcgtcaaggccgtgtacgtctaagtatgaaagaagcagtagagaagccagcagaagaa
gcaaacgacgcttctgaagcaaaaggcgagtaa
DBGET
integrated database retrieval system
