Vibrio campbellii ATCC BAA-1116: M892_14775
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Entry
M892_14775 CDS
T02837
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vca
Vibrio campbellii ATCC BAA-1116
Pathway
vca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M892_14775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vca03019
]
M892_14775
03400 DNA repair and recombination proteins [BR:
vca03400
]
M892_14775
Enzymes [BR:
vca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M892_14775
Messenger RNA biogenesis [BR:
vca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M892_14775
DNA repair and recombination proteins [BR:
vca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M892_14775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
DDE_3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGU95525
LinkDB
All DBs
Position
I:complement(3190450..3192375)
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AA seq
641 aa
AA seq
DB search
MQSDSLQQTLQSVFGFDSLRSGQQPVIEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHL
TLVISPLLALMKDQLSFLQSRGIAAASIDSSQSREETQQVMAGVKNGHIKILMISVERLK
NERFREFIRQIPLSLMVVDEAHCISEWGHNFRPDYLKLPQYQRELNIPQTLLLTATATPA
VIEDMQSKFDIAGENITVTGFYRSNLDISVVPCDEENKQTQLNDIIAAAPKLPSIVYVTQ
QQTAEQVASSLIRLGINAHAYHAGMKSDIREKIQQQFMTSQIDCIVATIAFGMGVDKSDI
RRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEPSSINYV
LEQIHENTPQWEVMALRLSRDSNIRQLPLKTLLVYLELAKVIEAKYSYFAEYRFKFLQDR
SFILNQFQGERRQFVEAIFACSNKAKVWCQVDLEALWMNYQSERSRVVAALDYFHQNGWI
ELESKQLTDVYSVLPATQNQETISQHLVELFQSKEQKDIERIHTMLNLFQSSDCLSHQLA
HYFADHNAPAQCGHCSVCRGQVASFPQPQQEQPELAHLSAWVDEFIQLSPTAISNAAVAR
FLCGISTPIIAQLKASKLRGYGSMANVSFEQVLKQVELARA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtgactcgcttcagcaaacgcttcaatccgtgttcgggtttgactcattaaga
tccggccaacaaccggtgattgaagcagtaatgaacggacactcagcggcagccatcttc
ccaactggctcagggaaatcgctttgctaccaacttcctgctactcagttaccacatctg
acattagtgatttcaccgcttcttgcgttgatgaaagaccaacttagctttttacaaagc
agaggcattgctgcggcatctatcgacagcagccaaagccgtgaagaaacacagcaggtg
atggctggcgtgaagaatggacatatcaagattttgatgatctcggtagagcgactcaaa
aacgaacgttttcgcgaattcattcgtcaaattccactttctctcatggtggtcgacgaa
gcgcactgtatctcagaatggggccataacttccgtcctgactaccttaaactgccgcaa
taccagcgtgaactgaatattcctcaaaccctgttgttgaccgcaacagcaacgcctgcg
gttatcgaagacatgcaaagtaagtttgatatcgctggcgagaatattacggttactggt
ttctatcgctctaatctcgatatctcggtggtaccttgcgatgaagaaaataagcaaacg
cagctgaatgacatcattgctgcggcccctaaactgccgagtatcgtgtacgtaactcaa
cagcaaaccgcagagcaagttgctagctcgctgattcgtttaggtatcaatgctcacgct
taccacgcaggtatgaaaagcgacatacgcgagaaaatccaacagcagtttatgacctcg
caaatcgactgcattgtcgccacaattgcctttgggatgggggtagataagtccgatatt
cgtcgtgtgattcacttcgatttaccgaaatcaatcgaaaactacgcacaagaaattggc
cgagcgggacgtgatgggcaacgttctgaatgtattcttctgggtaatacttctggccta
acggtgttagagaactttgtttacggtgacacgccagagccaagctcaatcaattatgta
ttggaacaaattcacgagaacacgcctcagtgggaagtgatggcgctgcgcttatctcgc
gacagcaacattcgccaactgccgcttaagaccttgttggtttatctagagttggcaaaa
gtgattgaagccaaatacagttatttcgcggaataccgcttcaagttcctacaagaccgg
tctttcatcctcaatcagttccaaggtgaacgacgtcagtttgttgaagctatttttgct
tgttcaaacaaagcgaaagtatggtgccaagtggatttagaagccttatggatgaactat
caatctgagcgtagccgcgtggttgcggcgcttgattacttccaccaaaacggttggatt
gaattagaaagcaaacagctcacggatgtgtattcggttctccctgcgactcaaaatcaa
gaaacgatttctcagcatttggttgagctgttccaatccaaagaacaaaaagacattgaa
cgaattcatacgatgttgaatctgttccaatcatcggactgcttgagccatcaattagcg
cattactttgctgatcacaatgcaccagcgcaatgtggtcactgctcagtatgtcgtgga
caagtcgcatcgttccctcagccacaacaagagcaacctgaactggcgcatttatccgct
tgggttgatgagtttattcagctttcaccaacggcgattagcaatgcagccgtagctcga
ttcctatgtggcattagcacgccaatcattgctcaattaaaagccagtaaactacgaggc
tatggctcaatggcgaacgtctcttttgaacaagtactcaagcaagttgagttagcacga
gcttag
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