Vibrio campbellii ATCC BAA-1116: M892_16170
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Entry
M892_16170 CDS
T02837
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
vca
Vibrio campbellii ATCC BAA-1116
Pathway
vca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M892_16170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vca03400
]
M892_16170
DNA repair and recombination proteins [BR:
vca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M892_16170
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M892_16170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
UB2H
Motif
Other DBs
NCBI-ProteinID:
AGU95727
LinkDB
All DBs
Position
I:3492377..3494407
Genome browser
AA seq
676 aa
AA seq
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MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAEAQRPA
ILLAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE
QMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQ
YSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRERILDAIESIKDELEVRKKQLLDNNKLLEEQRISQRTQFDIEMMNE
LGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKE
TLVEFGFRLPSALDNRPMKFEEFEAISPQTIFVSATPGNYELEKSADEIADQVVRPTGLL
DPELEVRPVATQVDDLLSEIRIRAAQDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI
GRAARNIKGKAILYADSITKSMKKAMDETDRRREKQKAYNAEMGIEPQALKRNIKDIMEL
GDITKSKRQRNTKQVPLSKVAEPSQTYEIMSPQQLEKEISRLEAAMYQHAQDLEFELAAQ
KRDEIEKLRAQFIANS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagtttatgaactggtctctgaatatcaaccatccggtgatcagccaaccgcc
atcaaacagttattagagggtttagacgcaggccttgcccatcagactctgttgggtgta
accggctcgggtaaaacattcacactggcaaacgtaattgcagaagcgcagcgtccggcg
attcttctcgcgccaaacaaaacacttgccgcgcaactgtacggtgagatgaaagccttc
ttcccaaataatgccgttgaatacttcgtttcttactacgattactatcaacccgaagct
tacgtgccaacgacggatacctttatcgaaaaagacgcgtcggtgaatgctcacatagag
cagatgcgtttatcggcaacaaaagcattattggaacgcaaagatgcaatcattgttgcg
tcggtttcggccatttatggtttgggtgacccagagtcgtacctacaaatgatgcttcac
ttgcgccgcggtgatgtgattgaccagcgcgacatgctgcgtcgtcttgcagaacttcaa
tattcacgtaacgatgttgcgtttgagcgtggccagttccgtgtgcgtggtgaagtgatt
gacatcttcccggcggaatcagaccaagacgccgtgcgcgtagagatgtttgacgatgaa
gtcgactgtatcagcgtatttgacccattgactggtgtggtcaaacagcgcgacctgccg
cgttatacgatttacccaaagacgcactatgtcacgccacgtgagcgtattcttgatgcc
attgaaagcattaaagacgagcttgaagtgcgtaagaagcagctgttagacaacaacaaa
ctcctagaagagcaacgtatcagccagcgcactcaatttgacattgagatgatgaacgag
ctgggtttctgttccggtatcgaaaactactctcgttacttaagtggacgagcggagggg
gagccgccaccaacgctatttgactacttacctcacgatggcttgctgatcatcgacgaa
tcacacgttaccgtaccgcaaattggcgcgatgtataaaggtgaccgctcacgtaaagag
acgctggtggagtttggtttccgtttgccttctgcattggataaccgcccaatgaagttc
gaagagttcgaggcgatttctccacagacaatatttgtttctgcaacgccgggtaactac
gaacttgagaagtcagccgatgagattgcggaccaggttgtgcgtccaacgggtctgctc
gatccggaattagaagttcgcccagttgctactcaggttgatgatctgttgtctgagatt
cgaattcgcgcagcgcaagacgagcgtgttcttgtgacgacgctaaccaagcgtatggca
gaagacttaaccgaatacctgcacgagcacgatgtgaaagttcgttaccttcactcagac
attgacacggttgagcgtgtagaaatcattcgcgaccttcgtttgggtgaatttgatgtg
ttggttgggatcaacttattgcgagaaggtctcgatatgccggaggtgtcgctggtggca
atcttggatgcagataaagaaggtttcttgcgttcagagcgttcattgattcagaccatt
ggtcgtgcggctcgtaacatcaaaggtaaagcgattctttacgcagattcgatcactaag
tcgatgaagaaagcgatggacgaaactgatcgtcgtcgagagaagcaaaaagcgtataac
gcagagatgggtattgagcctcaagccttgaagcgcaatattaaagacatcatggagttg
ggggatatcaccaaatcgaagcgtcagcgtaatactaagcaagtgccgctatcgaaagtg
gcagagccttctcagacttacgagatcatgtctccacaacagctggagaaggagatcagt
cgtttggaagcggcgatgtaccaacacgctcaagatcttgaatttgaattggcggcccag
aaacgtgacgagattgaaaagctgcgcgctcaatttatcgcgaacagttaa
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