KEGG   Vibrio campbellii ATCC BAA-1116: M892_26415
Entry
M892_26415        CDS       T02837                                 
Name
(GenBank) RNA polymerase, sigma-28 LafS/FliA/RpoF
  KO
K02405  RNA polymerase sigma factor FliA
Organism
vca  Vibrio campbellii ATCC BAA-1116
Pathway
vca02020  Two-component system
vca02040  Flagellar assembly
vca05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vca00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    M892_26415
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    M892_26415
  09142 Cell motility
   02040 Flagellar assembly
    M892_26415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vca03021]
    M892_26415
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:vca02035]
    M892_26415
Transcription machinery [BR:vca03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     M892_26415
Bacterial motility proteins [BR:vca02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    M892_26415
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r3 Sigma70_r4_2 EIAV_Rev
Other DBs
NCBI-ProteinID: AGU97987
LinkDB
Position
II:1862376..1863104
AA seq 242 aa
MLEMNLQESYTATEEVNTPSRPIDENALLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIG
LIALVEAGRRYGDVDDPHFPAFAVCRVRGAILDELRRLDWRSRKTRQQAHELNDVTRDLT
RALGRMPTDAEIIKALGTDEQDYYNRQNAALAGEMQSLDQLMETGGESHFGGQYDGMEHE
HIRRSLDTALGKMSKRDQLLLTLFYQHELNLHEIALVLDLTPPRICQLHKQALKQLNQLM
SS
NT seq 729 nt   +upstreamnt  +downstreamnt
atgttggagatgaacttacaggaaagttataccgcgacggaggaagtaaatacgccgtcg
cgcccgattgatgaaaatgcactgctgcaacgtcaccaagtcatggttaagcgcgtagta
aatcaactgcgcgttcatgcgacctcgcactgcagcattgaagacatgcagcaaatcggc
ttgattgcgcttgtcgaagctgggcgtcgttatggggatgtggatgatccacacttcccc
gcttttgccgtttgtcgtgttcgtggcgcgattttggacgagcttcgtcgtttggattgg
cgctcacgcaaaacccgccaacaggcgcatgagcttaacgatgtgacacgagatcttact
cgggcgctgggcagaatgcccaccgatgctgaaatcatcaaagcgctaggtacggatgag
caagactactataaccgccaaaacgccgcactcgctggcgaaatgcaaagcctcgaccaa
ttgatggaaactggcggagagagccactttggcggccaatatgacggcatggaacatgag
cacattcgccgtagcttagacactgcgctgggcaaaatgtcgaaacgtgaccaactgttg
ctcaccttgttctatcaacatgaactcaacctccatgaaatcgcgctcgtgctcgatctg
acaccacctcgcatctgtcagttgcacaaacaagcgcttaaacaactcaaccaattaatg
tcctcttag

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