KEGG   Venturia canescens: 122405995
Entry
122405995         CDS       T09386                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
vcan  Venturia canescens
Pathway
vcan03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vcan00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122405995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vcan03041]
    122405995
Spliceosome [BR:vcan03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    122405995
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_Gbeta EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st PRP4 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_IFT140_1st WD40_like Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_Nup120_160 Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 122405995
NCBI-ProteinID: XP_043267060
LinkDB
Position
2:complement(8228266..8233524)
AA seq 526 aa
MSDDEDLVYVKKQKIVHYGSLEETERARLAANAGESSDDEKDGPGTNDLSSGGMALGNVH
ISNEYMDLEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKNLRQLGEPICLFGEGPA
DRRARLRELLASLGEDAIKKKHQEEEKPAHPPERDTEATWYHEGPDSLQIARSWIASYSL
PRAKARLDRAREELDLPGATRTARRQELLKKLQALTIYCSQIGDTRPISFCEFSPNSKML
ATASWSGLCKLWSVPDCNLLRTLKGHTCNVGCIVFHPKATLSQEVVSEKPGQTCVLASCA
SDGTVKLWGSGSGEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCHDSSWRLWDLEQQAEV
LHQEGHAKPVHCISFQGDGSVSATGGHDSFGRVWDLRTGRCIMFMEGHLKAVFGIDFSSN
GYHIATGSEDNTCKIWDLRKRSCVYTIPSHTNLLSDVKYQKEEGQYLVTASYDGSAKIWS
NKTWQPLKTLQGHDGKVMSADVSADQKFIATSSYDRTFKLWAPENM
NT seq 1581 nt   +upstreamnt  +downstreamnt
atgtcggacgatgaagatttggtgtacgtgaagaagcaaaaaattgtgcattatggttcg
ttggaagagactgagagggcaagactcgctgctaacgcaggcgagtcttccgacgatgaa
aaagatggcccaggaacaaatgatctttcgagtggtggtatggctctgggcaatgtacac
atatccaatgagtacatggatcttgaagatgagatgtccaaagatcgtcaagccctgcta
gaggaatttgagcgcaggaaaaaagcaaggcagattaatgtttccaccgatgattctgag
gtcaaaaagaatttacgacaattaggtgaacccatttgtctctttggtgagggtcctgcc
gatcgacgagccagattgagagaacttcttgctagtcttggcgaagatgccattaaaaag
aaacaccaagaagaagaaaagcctgctcatccaccagaacgtgataccgaagctacttgg
taccacgaaggaccggattctcttcaaattgctcgatcttggattgcatcatattcattg
ccgagagctaaggcaaggttggaccgtgcaagagaagagctggatcttcctggagcgacg
cgcacagcccgtcgtcaagagctattgaaaaagttacaagcactaacaatatactgctca
caaatcggagacacgaggcccatatcgttctgcgagttcagtccaaactcaaaaatgctt
gcgactgcctcgtggtcaggactttgcaagttatggtctgtacctgactgtaaccttttg
cgaactcttaaaggtcacacttgtaatgttggatgcattgtttttcatcctaaagccacg
ttaagccaagaagtagtgagcgaaaagcctggccagacgtgcgtacttgcaagctgcgcg
tcagacggaacggtcaaattgtggggaagcggaagcggagaagagcctcttgcagaggtc
gaaggtcatgagccacacagggtctcgagaattgcttttcacccatccggacggttcctt
ggcacatgctgtcacgactcttcttggcggttgtgggatctcgaacagcaggctgaagta
cttcatcaggagggacatgcgaaacccgttcattgcataagtttccaaggcgacggcagc
gtaagtgcgactggaggtcacgactcattcgggcgggtatgggatcttcgtaccggtcgc
tgcatcatgtttatggaaggtcatttgaaagctgtattcgggattgatttttcatcaaat
ggttatcacatagcgaccggaagcgaggataatacttgcaagatctgggacttgcgtaag
cgttcgtgtgtttacacaatcccgtcgcacacgaatttattgtcggacgtgaagtatcaa
aaggaggaagggcagtatctagtcacggcatcgtacgacgggagcgcaaaaatctggtcg
aataagacgtggcagcctctcaaaacgctgcaaggtcacgacggtaaagttatgtcagcc
gatgtgtccgcggatcaaaagtttattgccacgagctcctacgatcgaacattcaaactg
tgggcaccagaaaatatgtga

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