Venturia canescens: 122407374
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Entry
122407374 CDS
T09386
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6-like isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
vcan
Venturia canescens
Pathway
vcan03015
mRNA surveillance pathway
vcan03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122407374
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122407374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122407374
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
122407374
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
Motif
Other DBs
NCBI-GeneID:
122407374
NCBI-ProteinID:
XP_043269473
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All DBs
Position
2:20032384..20045938
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AA seq
785 aa
AA seq
DB search
MADGDIDLYADDLEQDFAQDEFAGDGVDLYDDVIAAPSGGNGGTAGGNSGSIDGDATSNN
EETNGNAPYHQLGNNIQPNQIGRRHQLYIGNLTWWTSDQDITDAVQSIGVSDFVEVKFFE
NRANGQSKGFCVVSLGSEQSMRMCMERLPKKDLHGQNPVVTFPTKQALNQFESQCKTRPA
PAPQQSQSQRPHNNPHQHQPPSSHERGIHINVNQHMQHSQQNHGPRMMMGPPQGPRPQRL
PPPGMGGPQGPGGPGQQGPPRMHGPPMGGPVPHHSIPGHPNQGPPPPGYQQSHWNGPRPN
GPPGPPRGPNGPGGPPQQGPPGPGPGQHRPPGMVRDRMQFHGGPPGPPGQGPPRGPPGHP
GGPPGDPRGAPPRPDWNRPPGMHHGPQGPPFPQHQHMQGPQGPGQGPPQRGPPPGSMGGM
LPGPGGPPQGHGGPPQGPPQGPPGGPAPHVNPAFFPQGPPHQHPGQHPGGPPGPPGPPHG
PPHGPPHGPPHGPPHGQPHGPPHAPPHGYGPPSAQPPYGAPGPDHRAEGPPPLTEQEFEE
IMGRNRTVSSSAIARAVSDAAAGEYASAIETLVTAISLIKQSKVAADDRCKILISSLQDT
LRGVETKSYGSARRERSRSRDRERSHRRRRERSRSRDREYRERSRERDRDRDRERDRERD
RDRDRERERYYSEPYPRERSRSRERDRERERDREYRERSREESTTRQSARPRVKEEPPET
APVSSAKPSRYYDDRYRERERERDRERETSRRPAEREREPERERERERERDRRDERGDSS
HRSRH
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgacattgatttgtacgccgatgatctcgagcaagattttgcgcaggac
gaatttgcgggtgatggcgtcgatctttacgacgacgttatagctgctccttccggaggt
aatggtggcactgctggtggaaacagcggttctatcgatggagatgccacttccaacaac
gaagaaacaaatggcaatgctccgtatcaccaattgggcaataacattcaacccaatcag
attggcagacgccatcaactttatatcggcaatctaacttggtggacaagtgatcaggac
atcacagatgcagtacagagtataggtgtatcggatttcgtggaagtgaaatttttcgag
aaccgtgcgaacggccagtccaaaggtttctgcgtagtgtcgctcggctcggaacaaagt
atgaggatgtgcatggaaagacttcctaaaaaggatcttcacggacagaatcctgtcgtg
acgtttcccacgaaacaagctttgaatcagtttgagtcgcaatgcaagacaagaccagct
ccagccccgcaacagagtcagagtcagcgtcctcacaataatccacatcagcaccaaccg
ccttcgtcgcacgaacgcggaatacacatcaatgtgaatcaacatatgcaacattcacaa
caaaatcacggccctagaatgatgatgggtcctcctcagggtccgcgaccgcagagattg
ccgcctcctggaatgggaggacctcagggacctggcggaccaggacaacaagggccacct
cggatgcacgggccaccgatgggagggccagtgcctcatcattcgattcctggccatccg
aatcaaggaccgccaccacctggatatcagcagagtcactggaacggcccacgaccaaat
ggacctcctggacctccgagaggaccaaacggaccgggtggaccacctcaacaaggtcca
ccaggacctgggcctgggcaacacaggccacctgggatggtgcgtgaccgaatgcaattc
cacggtgggccccctgggccacctggacagggacctccgcgtggaccacccggacatccg
ggaggaccacctggtgatccaagaggagctccacctcgccctgactggaatcgaccgcca
ggcatgcatcacggaccgcagggaccaccattcccgcagcatcagcatatgcaaggtcct
caaggaccgggacaaggtccacctcaaaggggaccacctccaggctcgatgggtggtatg
ttgccaggtcctggcggtccaccacaaggtcacggtggaccaccgcaaggtccaccgcaa
ggacctcctggaggtcctgcgcctcacgttaatccggccttcttcccgcaaggtccacca
catcaacatcccggtcaacatccaggcgggccgcctggtccacctggaccaccgcatggt
ccgcctcatggcccgcctcatggtcctcctcacggacccccccatggacaaccccatgga
ccaccacacgcacctcctcatggctatggtccaccatcagcccagccaccctacggtgca
cctggacctgatcatcgtgccgaaggtccaccccctttgacggaacaggaattcgaagaa
ataatgggtcgtaatcgaaccgtttcatcatccgctatcgcccgtgcggtatcggacgct
gcagcgggtgaatacgctagtgccatagaaaccttggtcaccgcgatatcactcatcaaa
caatccaaggttgcggcagacgatcgatgtaaaattttgataagttccctccaagatacg
ctcaggggagtggaaaccaagagttacggttcggcccgacgagaacgttctcgctcacgc
gatagagaacggagtcacagacgacgtcgagagcggtcaagaagtcgtgatcgtgaatac
agggagcgcagtcgggagcgtgatcgtgatagagacagggaacgtgatcgcgaaagggat
cgtgatcgtgatcgcgagcgtgaacgttactacagcgagccgtatccgagggagagatca
cgcagcagggagcgggatcgtgaacgtgaacgcgacagggaatatagagagcgaagccgc
gaagagagtacgacgcgtcagtcagccagaccgagagtaaaggaagagccgcctgaaacg
gctccagtatcgtccgccaagccgtctaggtattatgacgatcgctacagagaacgcgaa
cgagagagagaccgagagcgtgaaaccagcagaagaccagccgaaagggagagagaacca
gaacgcgaacgtgaaagagaacgtgaacgggatcgtcgcgacgagagaggagattcatcg
catcgttccagacattag
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integrated database retrieval system
