Venturia canescens: 122407541
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Entry
122407541 CDS
T09386
Name
(RefSeq) transcription elongation factor SPT6 isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
vcan
Venturia canescens
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcan03021
]
122407541
03036 Chromosome and associated proteins [BR:
vcan03036
]
122407541
Transcription machinery [BR:
vcan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122407541
Chromosome and associated proteins [BR:
vcan03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
122407541
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
SH2
HHH_3
Tex_central_region
HHH_9
Tex_YqgF
Spt6_S1
OB_RRP5_4th
S1_RRP5
Tex_N
HTH_10
Motif
Other DBs
NCBI-GeneID:
122407541
NCBI-ProteinID:
XP_043269767
LinkDB
All DBs
Position
3:complement(1881066..1890525)
Genome browser
AA seq
1768 aa
AA seq
DB search
MADFLDSEAEESEEEQELDHSGKKKAKKAKAMEESDEEEEDDEDRLREELKDLIDDNPIE
ESDGEDSDASGTSKKRKKSDDEDFDDRLEDDDYDLIEENLGITVERKRFKRLKRVEDRES
DEEQEQQPGEERDAIANELFEGGSGDEREGPTEDERRSERSHRPEAETFDEEGSEGEYSD
ADDFIVDDDGRPITERKRKKKPIFSDAALQEAQDIFGVDFDYDEFDKYGQEDYEEEEDEE
EDEYLDDDGDGERPRRPKKTSKKRPTRKSIFEIYEPSELKRGHFTDMDNEIRNTDIPERM
QLRSVPVTSVPEGSEELDLEAEWIYKQAFCRPTVSIQDAHLNDEAKERARKGPQTVGKIK
KALDFMRNQYFEVPFISFYRKEYVLQELNINDLWKVYKYDAKWCQLRQRKENLMTLFEKM
RNYQLDQIMKNPDAPLPDNVRVIKEEDIDRLKGVQTSEELNDVHHHFMLYYSQDIPSMQE
AVRQKEREARREARAQKRKQQLIEAEENGTDPPPEDEINIDDEEEPDETLKQAVRTGPYS
ICRKAGLDTFAKKFGLTPEHFAENLRDNYQRHEVDQEPVEPTTVAADFCGQKFQTADEVV
KAVQLMVAFQLAREPLVRKCVREMYMERAKISVRPTKKGIKEIDENHPIYSMKYLKDKPV
RDLVGDQYLKLSMAEEDKLITITLSDAIEGNTSSNYVDEIKQLYYRDEFSKNVQDWNALR
VGSVEMAMNRMVIPDLKKELKANLITEAKECVMRACCRKMYNWIKVAPYTCKFPGEEDEE
WNTSKGIRVMGVAYVPDYSQAAFACIVAPDGECTDYLRLPHLLKRKNGFREDEKIMKEAD
LLAIKHFIATKKPHVIVLGGESREATMLVEDLKECVANLTEEEQYPPIQIEICENELAKI
YANSNKGISEFRDYPILLRQAISLARRLQDPLVEFSQLCTPDEEILCLKYHAYQDQLPKE
ELLENIYLEFVNRVNEVGVDINKAVQQAYSGNLLQFVCGLGPRKGQALMKMLKQTNQRLE
NRTQLVTACHMGPKVFINCAGFIKIDTNSLGDSTDVYVEILDGSRVHPETYEWARKMAVD
ALEYDDEDTNPSMALDEILSAPERLKDLDLDAFAEELERQGFGNKCITLYDIRAELNCRY
KDLRAPYTSPSPEKLFDILTKETPESFYIGKLILATVAGISHRKPQGDQLDQANPVRNDE
SGLWQCPFCLKNDFPELSEVWNHFDAGGCPGKATGVRLRLDNGISGYIHIKNLSDKHVAN
PEERVTPGQIIHCRVIKIEVDRFSVECTSKSSDLADKNHEWRPQRDPFFDTEAEEKDTKV
EEDAKKVKQRQTYVKRVIVHPSFHNISYSEAEKMMKTTKQGDAVVRPSSKGADHLTVTWK
VTDDIYQHIDVREEGKGNAFSLGTSLWIGNEEFEDLDEILARHVNPMASYASELLDYKHF
KPTVMGMKDKAEELLKEQQRENPGGIPYIISAAKNYPGKFLLSYLPRSNCRHEYVTVSPE
GFRFRGQMFARVGDLFSWFKKHFRDPVPGQTTPSTPRGAATSRTPYHNTPGAGGVNQEAI
QRVAQNLPHHMLHSLSQVANQTPHHYPPHTPGTAAAAGYGGMHTYPNTPYTPSGQTPFMT
PYQTPHHTPHHSQPTPRYGQQTPSQGQFLHPAAAQATGGMHHRSTPSHRPTPPITNSSGD
PMDWKKAAEAWARLKQTVPRISNSTPRYDDSRKTPRGYEESSGRATPRTRPPPARTPSYK
SPRGTPHTNSSPRSMSLSGDGTPLYDES
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atggcagactttttggattcagaggccgaagagagtgaggaggaacaagaattggatcac
agtggaaagaagaaagctaaaaaagccaaggcaatggaggaaagtgatgaagaggaagaa
gatgacgaagatagactgcgagaagagttgaaagatcttatcgatgacaatcccatagaa
gaaagtgacggcgaagatagtgatgcatctggaacttccaaaaagagaaagaaaagcgac
gatgaagattttgatgataggttggaagacgacgattatgatttaatagaagaaaatctt
ggtataacagttgagaggaaacgtttcaaacgtctcaaacgtgtggaagatcgagaatcc
gatgaggagcaagagcaacaacccggtgaagagcgtgacgctattgccaatgaactcttc
gaaggtggctcgggggatgagcgggaaggtccgacggaggatgagcgaagaagcgaaaga
agccacagacctgaagcagaaacattcgacgaggagggtagcgagggagagtattcggat
gccgatgattttattgttgacgatgacggaagaccgattactgaaagaaagcgaaagaaa
aagccaatattttcggacgctgccctccaagaggcccaggatatattcggagttgacttc
gattacgacgaattcgacaagtacggtcaagaggattacgaagaagaggaagatgaagag
gaagatgagtatttggacgacgacggagacggcgaaagaccccgtcgtccgaagaaaacg
tcgaagaaaagaccaactagaaagagcatctttgagatttacgaacccagcgaacttaaa
cgtggtcatttcactgatatggataacgagatccgtaataccgacattccggaacgcatg
cagctccgatcagtgccggtgacttcagtccctgagggttcggaagagctcgatcttgag
gctgaatggatatacaagcaagcattctgtcgtccaacggtatcgattcaagacgcccat
ttgaacgacgaagcaaaagagcgtgctcgaaaaggtccccaaacagtggggaaaataaaa
aaagcacttgatttcatgaggaatcaatacttcgaagttccttttatatcattttacagg
aaggaatacgtactgcaggaattgaacataaacgatctttggaaagtgtacaagtacgat
gcgaagtggtgtcagttacgtcagagaaaagaaaacttgatgacgcttttcgaaaaaatg
cgaaactatcagttggatcaaataatgaaaaatccagatgcaccgctccccgataacgtt
cgggttataaaagaagaggacattgaccgtttgaaaggcgtacaaacgagtgaggagctt
aacgacgttcatcatcattttatgctttattacagtcaagatatcccgagcatgcaagaa
gcggtgcgtcaaaaagagcgagaagctagacgcgaggctagagcacagaagcgcaaacag
caattgatcgaagctgaggaaaatggaacagatcctccgccggaggacgaaataaacatc
gatgacgaagaagaacctgacgaaactctgaaacaagcagtacgaacggggccttattcg
atatgtaggaaagctggtctcgatacatttgctaaaaagtttggtctcactcccgaacat
ttcgctgaaaatttacgagacaattatcagcgtcatgaagttgatcaagagccggttgag
ccgacgaccgttgcggctgatttttgcggccagaagtttcaaacggctgacgaagtggta
aaagccgtacaattgatggtcgcatttcaattagcacgagagccactcgtccgaaagtgc
gttcgtgaaatgtacatggaaagagcaaaaatatcggtacgcccaacgaaaaagggcata
aaagaaatcgatgagaaccatccaatttactctatgaagtacctcaaagacaaacctgta
cgcgatctcgtcggtgatcaatatttgaaactttcgatggccgaagaagacaagcttatc
acgataacgcttagcgacgctatcgaaggcaacactagcagtaactacgtcgatgagata
aaacagctatattacagagacgaattcagtaaaaatgttcaagattggaacgccctcaga
gtcggaagtgttgaaatggcaatgaatcgtatggtaataccggatttgaagaaagagctc
aaagccaatttaatcaccgaagcgaaagagtgtgttatgcgagcttgttgtcgaaaaatg
tacaattggattaaggttgcgccttacacgtgcaaatttcctggcgaggaggacgaagaa
tggaatacgagtaaaggaattcgtgttatgggtgttgcctacgtgcctgattattctcaa
gcagcgttcgcttgtatcgttgcccctgatggcgaatgcaccgattatctgagattgcca
catcttttaaagcggaaaaatggctttcgggaagatgagaaaattatgaaagaggccgat
ttactcgccattaaacatttcattgcaacgaaaaaacctcatgtcattgtcctcggtggt
gaatccagagaagcaacgatgctcgtcgaggatctcaaagagtgcgtcgctaatttgacc
gaagaagaacagtatccacctatacaaatcgaaatatgcgagaacgaactggccaaaata
tatgcgaacagtaacaagggaatttccgaatttcgtgattatccaatattgctgcggcaa
gcaatatcattggctcgtcgtttgcaagatcctctcgtcgaattttcacagttatgcaca
cccgacgaagaaattttgtgtctgaaatatcatgcttatcaggatcaattgccgaaggaa
gaattgctggagaatatttatctcgaattcgtaaatcgagtcaacgaggttggtgtcgac
ataaataaagctgtgcaacaggcttattccggcaatcttttacaatttgtttgcggtttg
ggaccgagaaaaggccaagcattaatgaaaatgttgaagcaaactaatcagagattggaa
aatcgtacgcagctcgtaacggcgtgtcacatgggtcctaaagtttttatcaattgtgct
ggatttataaaaatcgacacgaacagtctgggtgacagtacggacgtttacgtcgagata
ctcgacggttccagggtgcatcctgaaacgtacgagtgggcgagaaaaatggctgttgat
gctttggagtacgatgacgaagacaccaatcccagtatggcactcgacgaaattctcagc
gcacctgaacgtctcaaagatcttgatctcgatgcttttgccgaggagctcgaaaggcag
ggattcggcaacaaatgcataactctttacgacatcagagctgaattgaactgccgatac
aaggatcttcgcgctccctatacctcaccgagtcctgaaaaactctttgatattctgacg
aaagaaacacccgagtctttttacatcggcaagttaattcttgccacagttgctggtata
agccacagaaaaccacaaggtgatcaactcgatcaagccaatcctgtgcgtaatgacgag
agcggcctttggcaatgcccgttctgtttgaaaaatgacttccccgaactctccgaagtt
tggaatcatttcgacgccggtggatgccccggaaaggcaacaggtgtcagattgcgtctt
gacaatggcatttctggatatattcatattaaaaatttgtctgacaagcacgtcgccaac
cctgaggaaagggttactcctggacagattatacattgccgtgttatcaaaatcgaggtt
gatcggttcagcgttgaatgtacaagtaaaagtagcgatctcgcggacaagaatcacgag
tggagaccacaacgagatcccttcttcgacacggaagccgaagagaaagatacgaaggtt
gaggaagatgcgaaaaaagtgaaacagcgacagacctacgtgaaacgtgtaatcgtgcat
ccgtccttccacaacataagttattccgaagctgaaaaaatgatgaaaacgacgaaacag
ggcgacgcggtagttcgcccgagtagcaaaggtgccgatcaccttacggtcacgtggaaa
gtaaccgatgacatttatcagcatattgatgtgagagaagagggcaaaggaaacgctttt
tctcttgggacaagcctgtggattggtaacgaagaattcgaggacttggacgaaatttta
gcgcgtcatgtcaatcctatggcttcttatgcttccgaactcttggattataaacatttc
aaaccaacggtaatgggtatgaaggacaaagctgaggagttgctgaaagaacagcagaga
gaaaatccaggtggcattccttacattatttcagccgccaagaattacccgggaaaattt
ctactctcctatctacctcgctcaaactgccgtcatgagtacgtaaccgtttcccctgaa
ggctttcggttcaggggtcaaatgttcgctcgggttggtgatcttttcagttggtttaaa
aaacacttccgggatcctgtaccaggccaaactacgccaagcacccctcggggtgctgct
acttccagaacgccatatcataacacacccggtgctggtggtgttaatcaagaagctata
caaagggtagctcagaatcttccacatcacatgcttcactcgctgtcgcaagtggctaat
caaacgcctcatcactatccgcctcatactccgggaactgcggcagctgctggatacggt
ggaatgcatacatatccaaatacgccgtacaccccatcggggcaaactccgttcatgacc
ccgtaccaaactcctcatcacactccacatcactcacagccaacgccaaggtacggtcaa
cagacaccgagtcaaggacaatttttgcatccggctgccgctcaagctactggaggaatg
catcacagatcgaccccgtctcacaggcctactcctcctataactaattcctctggcgat
cccatggattggaagaaagctgctgaagcgtgggcacgcttgaagcaaaccgtgccaaga
atttcgaacagcactccaagatacgacgattctcgtaaaactccaagaggttacgaagag
tcatcaggccgagcgactccgcgaactcgaccacctccagcacgaactccatcttacaaa
tcgccacgtggaactcctcatacaaattccagtccacggagtatgtcgctaagtggagat
ggaactccactttacgacgagagctaa
DBGET
integrated database retrieval system
