Venturia canescens: 122408228
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Entry
122408228 CDS
T09386
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
vcan
Venturia canescens
Pathway
vcan03018
RNA degradation
vcan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122408228
09123 Folding, sorting and degradation
03018 RNA degradation
122408228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122408228
03041 Spliceosome [BR:
vcan03041
]
122408228
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122408228
mRNA degradation factors
5'-3' decay
Lsm complex
122408228
Spliceosome [BR:
vcan03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122408228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Gemin6
Motif
Other DBs
NCBI-GeneID:
122408228
NCBI-ProteinID:
XP_043270813
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Position
3:21770067..21772165
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AA seq
114 aa
AA seq
DB search
MSVVKQQPQNTHGDHKEKKRKESILDLSKYLEKNIRVKFAGGRETAGILKGYDPLLNLVL
DNTTEYLRDPDDPYKLNQGTRMLGLVVCRGTSVVLICPVDGMESIQNPFIQQDA
NT seq
345 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggtgaaacaacagcctcagaatactcatggcgatcataaggagaaaaaaagg
aaagagagcattttagacttgtcgaagtaccttgagaaaaatatacgtgtgaaatttgct
ggtggcagggaaaccgctggtatcctcaaaggttatgatcctctactcaatctcgtacta
gacaatacaacggagtatttgagagatcctgatgatccgtataaactcaatcaaggtacg
agaatgttggggcttgtagtgtgtcgaggtacttcagtagttctgatatgtcccgtcgat
ggtatggaatcgatacaaaatccgtttatacaacaagatgcttga
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