Venturia canescens: 122408717
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Entry
122408717 CDS
T09386
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
vcan
Venturia canescens
Pathway
vcan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122408717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcan03041
]
122408717
Spliceosome [BR:
vcan03041
]
Complex B
Other components
Prp19-related factors
122408717
Complex C
122408717
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
RRM_occluded
Torus
RRM_YTH1
zf-CCCH_2
zf-CCCH
zf-CCCH_4
Nup35_RRM_2
zf-CCCH_3
zf-CCCH_10
RRM_3
zf-CCCH_12
DUF5092
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
122408717
NCBI-ProteinID:
XP_043271631
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Position
4:18902285..18904777
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AA seq
415 aa
AA seq
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MATSKTTNTYNRQNWEDAEFPILCQTCLGDNPYIRMTKEKYGKECKICVRPFTVFRWCPG
ARMRFKKTEVCQTCSRLKNVCQTCLLDLEYGLPIQVRDAALKIKDDLPRSEVNKEYYVQN
IDNEIGKMDATTPAGSVGKSAAASDLLMKLARTSPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGVNDPVADKLMRRAAAMPKLDPPEDKSITTLYIGNLG
DVLTEKQLRDHFYQYGEIRSVTMVPRQQCAFIQYTQRNAAEAAAERTFNKLILGGRRLTI
KWGRSQGRQTISAAEAPREMLEPVPGLPGALPPPPESMGNNFFNLQATPGIMPPMMIPPP
PVAPQFMFPPQIAAAAAAAAAAPIFPPGTTPIHYPSQDPSRMGASQGIGKPWPEE
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggctacatccaaaaccaccaatacttataatagacagaattgggaagatgctgaattt
ccgattctttgtcagacatgcctgggggataatccttatatacgcatgacaaaagagaaa
tatggcaaagaatgtaaaatctgtgtgaggccattcacggtattccgatggtgtccagga
gctcgtatgcgtttcaagaaaacagaggtctgtcagacgtgcagtcgtttgaaaaacgta
tgtcaaacgtgtctgttggatttggaatacggtttgccgattcaagtgagggacgcggca
ttaaaaataaaggacgatttaccacgttcggaagtgaacaaggagtactatgtgcaaaat
atagacaacgagattgggaaaatggatgcaacaacgccagcgggttcagtgggaaaatca
gcggctgcgagtgatttgttgatgaaacttgcacgcactagtccttattacaagcgcaac
agacctcatatatgttcattttgggtaaagggtgaatgcaagagaggagaggaatgtccg
tatcgtcatgagaaaccaacggatcccgatgatccgttggccgatcaaaacatcaaagat
cgttattatggagtcaacgatccagtcgctgacaaattaatgagacgagctgcagcaatg
ccgaagcttgatccacccgaggacaaatcaataaccaccctctacattggcaatttgggt
gacgtgctcacagaaaaacaattacgcgatcatttttatcaatatggagaaataagatcg
gtaacaatggtaccaagacaacaatgcgctttcattcaatacactcagagaaatgcggct
gaagcagccgccgaacggactttcaataaattgattctcggcggtcgacgactaacaatt
aaatggggcagatctcaaggtcgacaaaccatttccgcggccgaagcacctcgcgaaatg
ctcgaacctgttcctggcttacccggtgctttaccaccaccgcccgagagtatgggcaat
aatttcttcaatctacaagctactccgggtattatgccacccatgatgattccaccgcca
ccagttgcgccacaatttatgtttcctcctcaaatcgctgctgctgctgctgctgccgca
gcggcgccaatcttcccgccaggcactacgccaatccactatcccagccaggatccatcg
aggatgggcgccagccagggaataggaaaaccatggcccgaagaataa
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