Venturia canescens: 122408919
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Entry
122408919 CDS
T09386
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
vcan
Venturia canescens
Pathway
vcan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122408919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122408919
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122408919
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122408919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
TssR_C
DUF6376
Motif
Other DBs
NCBI-GeneID:
122408919
NCBI-ProteinID:
XP_043271972
LinkDB
All DBs
Position
4:complement(11890480..11897013)
Genome browser
AA seq
1624 aa
AA seq
DB search
MLPSSSQLHSDPLGSPKPPRKPGGAAIGELGLSRSPCDVEGLPVSGTLDVVPNMARTVLE
DIENEANSYFQRIYNNPPQPTLSIDEILDVMIKLRESKAERENKIFNCMLRNLFGEYQYF
PRYPKKALHITAQLFGGIIERNVISAQALGCALQIVLDALKKPKNSKVHYFGITALDCFK
TRLQEWQSYCKQIKAIRNFNELPPHLIKCVQFSLQAQNPSTWPRAVLLQSSTTILATSSN
TIASATVTTSTRRSKLTSTSTSTSARRSIANATNVDMPLVAAGKHKNIVAPPEALQDKIV
SIFNNLIQSNLREKCDDIRKIVSKEFWPWMARYLVVNRASSERNFHALYSNFLDCLRQPY
FNKIVTRETLHNIKVLLRRKKSLKNFSDRSLLRNLGHWLGMLTLRRNKPILYIDIDLKSL
ILEAYHKEQQELLYVGPFVARILESCAKSRVFRPPNPWTMAIMRVLAELHQEPDLKLYLK
FEIEALCKQLNIDIANLKPVVYLKNPQKLCALEYQLLPLPKNLEDAHRPSQQQRQRVPTP
VEELIESIPGSNVLQAIPAADATPPFSSTSQSEPRFDYADVSMNVIAAVSQHIKININLT
LFQLEPNLKLLIRPTVERAIHESLPSLVSRSIAVALAASEQIVRKDFALDPDEVRITTAA
RLMVRSLTAAMMMTTCRSQILASMSSHLKEVFLRTVTGLNFLQEELAEQAANVVSAENVD
LACAFLQKTAIEIAMQEIDKRLSNEIHLRKTARQEVRSYYDPVAKFQADRMPDKIRLNAS
GVTPRQMAVYEEFAQNIPGFLPLSERNEPSIPKPLNETSVTVLTGYPVAVPLPSILHVTS
PGCAINDDKVGTMLEKLAGEIEALLSSLRFAVSSPQYAALYSLFESVILMRRSQDTGAAL
ILLKKAVEGLLENSTISGSVVDSSIIVNYREVHLKVLKCLQHPSVYGMQWTNRHVNHCLI
ECCHKFHYNFEAIDLIVEADLLDLVQFDLTLAQAMEFGDRMVILFATQLLQSHLIDRRET
THLTESDFIYTINVLTRIVHQRAAPEGISIAKLSSLIGSLQAYRDPDTLISRVPSGPTTH
SNPGSFQFEVQNVHNLPDLMKKSNFLLHEWVKIYYFPAHSHYATEVFGIFVQRMNIHGLL
KTKDSITLFFKIGTQMCVDHCYAALAETSATPSTLRANSFRIVDAFVHLVALLIKHLDDT
LNPHTKIDLLNNVLGIVAGALTQDHEFRGTEFHQLPYQRILIMLLLELCSPEPILRAFSF
EILTAFCRTFHILRPAKVAGFCYAWLELVSHRAFISCIFAMEPHEKCWGMYARLLIDLFE
FLRPHLRNANLSRPVNLFYKGTLRVLLVLLHDFPEFLCDYYYDFCDVIPQDCIQLRNLIL
SAHPRAVRLPDPSTLNLKVDMLQEITYVPRVLTNFAAVIKPNLKNQLDLYLETRTPVTFL
SDLTTNLHVRQENGTHINIPLINAIVLYVGSHAIALMRNQGHAFDVSTIASSSHMDVFQK
LAVDLDPASRYSFFNAIANQLRYPSTHTYYFCCILLCLFAEAKTEEIQEHITIVLLERLI
VNQPHPWGLLITFIELVKNPKYAFWSLEFVRSASEIEKFIETITHLYMIQQQVEPPSKPQ
EPEL
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgttgccgtcgtcctcgcaactccactcggatccgctgggaagtccaaagccgcccagg
aaaccgggaggtgcggccatcggtgaactcggtctgtcaaggtctccgtgtgatgtcgaa
ggtcttccagtttccggaacgttggacgtcgttccaaacatggcgcgaactgtattagaa
gacatagagaacgaagcgaacagttattttcaacgaatttacaataatccgcctcagccg
acgctctcaatcgacgaaattttggatgtgatgataaaacttcgagaatcgaaagccgag
cgcgaaaacaagattttcaattgcatgctgcgaaatctgttcggagagtaccaatatttt
ccacggtatccgaaaaaagcattgcacatcacagcacaattgttcggcggcataatcgag
cgcaacgtcatcagcgctcaggcacttggatgcgcactgcaaatagtcctggatgctctg
aaaaaacccaaaaacagcaaagtccattatttcggtataacggccctcgattgtttcaaa
actcgcttgcaagagtggcaatcttactgcaaacaaatcaaggctattcgaaattttaac
gaattaccacctcatctcataaaatgtgtacagtttagtttgcaggctcaaaacccatcg
acctggcctcgagctgttctactgcagagttccacaacgatcctcgcgacatcctcaaat
acgatcgcatcggctactgtaacgacgagcacgcgtcggtcaaaattgacctcgacatcg
acatcgacctcggcgcggcggtcaatcgctaatgctaccaacgttgacatgcccctcgtt
gcagctggtaaacataagaatatcgtggctccgccggaagctctacaggacaagattgtt
tccatatttaacaacctgattcaatcgaatctccgagaaaagtgtgacgacatacggaag
atcgtgtcgaaggaattttggccgtggatggcgcgatatctcgtggtgaatcgcgccagt
tcagagcgcaatttccacgcgctttactctaattttctcgactgtctccgacaaccatat
ttcaataaaatagttacccgagagacacttcacaacattaaagtattgctacgaagaaag
aaaagccttaaaaatttttccgatcgctcgttgctcagaaacctaggacattggctagga
atgttgacgcttcgtaggaacaaaccaattttgtacattgacatcgatctgaagagtctt
attctggaagcatatcacaaggagcaacaagagttactttacgtggggccgtttgtcgcc
agaattcttgagtcttgcgccaagagtcgagtctttcgcccaccaaatccttggacaatg
gcaataatgagggttcttgctgagcttcatcaagagcctgatctcaagctctatctcaaa
tttgaaatcgaggctttgtgcaaacaattgaacatcgatattgccaacctcaaacccgtt
gtttacctgaagaatccccaaaagttgtgcgcactcgagtatcaactgttgcccctcccg
aagaatttagaggacgcgcaccgtccttcgcagcagcaacggcaacgggtaccaacacca
gtcgaagaactgatcgaatcaataccgggttcaaacgtgttgcaagcaataccagcagct
gatgcaacaccaccattttcgtcgacctcgcagtcggagccgcgattcgattacgcggac
gtatcgatgaacgtgattgcagcggtatcgcaacacattaaaatcaacattaatcttacc
ttattccagctggagccgaatctcaaactgttgatacgaccaacggtggagcgagccatt
catgaatcgctgccttcgctggtcagtcgttcgattgcggtagcgcttgcggcgagcgaa
caaatagttcggaaggactttgccctcgatccggatgaagtgaggataactacagcagcg
cgtctcatggttaggagcttgaccgcagcaatgatgatgacaacttgtcggagtcagatt
ctcgcatcgatgagttcgcatctcaaggaagtattcctcaggaccgtgacaggtctgaac
tttctccaagaggagctcgctgagcaggcagcaaacgtagtttcagccgaaaatgtcgac
ctcgcttgcgcctttttgcagaaaaccgcgatcgaaatagctatgcaggaaatagataaa
cgactctcgaacgagattcacttgaggaagacggcgcgacaagaggtcagaagttattac
gatcctgttgcgaaatttcaggctgaccgaatgcccgataaaataaggctcaatgcgagt
ggcgtgacgcctcgacaaatggcagtttatgaagaattcgctcagaacattccaggattt
ttgccactatccgagcgcaacgagcctagtataccgaaaccgttgaatgaaacaagcgta
accgttctcaccggttatcccgtggctgttcccttaccaagtatcctacacgttacttca
cccggttgcgccataaacgacgacaaggttgggacaatgttggaaaaacttgccggtgaa
atcgaagcccttctcagttcactaagattcgctgtttcatctcctcaatacgccgcgctc
tacagtcttttcgaatcggtcatactgatgagaaggtctcaggacaccggtgccgcgttg
atacttcttaaaaaagcagtcgaaggcctcctggagaattccaccatttccggcagcgtg
gtcgactcaagcataatcgtaaattaccgcgaagtgcatctaaaagtactcaaatgtctt
caacatccaagcgtctacggtatgcaatggaccaacagacacgtaaaccattgtctgatc
gaatgctgccacaaattccattacaacttcgaagccatcgatttgatcgtcgaagctgat
ctcttggatctcgtgcaatttgatcttacgctcgctcaagctatggaattcggcgatcgc
atggtcattcttttcgccacacaactcttacagtcgcatctcatcgatagacgagaaacc
acgcacctcacagaatctgatttcatctacactatcaatgtactgaccagaatcgttcac
cagagagccgcaccggaaggaatttccattgcgaaactgagtagtctcattgggtcactt
caggcttatcgcgaccctgatacgctcatttccagagtgccttctggaccaacgactcat
agcaatcctggatcgtttcaatttgaagttcaaaatgtccacaatctaccggatctaatg
aagaagtcaaattttctcctccacgagtgggtgaagatctactactttccagcgcactcg
cactatgcaaccgaggtctttggaatcttcgtgcagcggatgaatattcacggtttattg
aagacgaaagattcaataactctgttcttcaagattggtacgcaaatgtgcgtggatcat
tgttacgcggcgttagcagagacgagcgcaaccccgtcgactttacgcgctaatagtttc
cgtatcgtggatgctttcgtgcacttagtcgcattgctcattaagcatttggacgacaca
ttgaatccccatacaaaaatcgatctgcttaacaacgtattgggaatagtagcaggcgca
ttgacacaagatcacgagtttcgaggcacggagtttcaccaattaccttatcagaggatc
ttgataatgttgctattggaattgtgttctccagagccgattctcagagcgtttagtttt
gaaatactgacagcattttgtcgcacgtttcacatcttaagaccggcgaaagtcgcaggt
ttctgttacgcctggctcgagctcgtctcccatcgggcattcatcagttgcatattcgcg
atggaaccgcatgaaaaatgctggggaatgtacgctcgactgctcattgatttgttcgaa
tttttgaggcctcatttacgcaacgccaacctctcaagacccgtaaaccttttctacaaa
ggcacgcttcgcgtgttgctcgtgctgctccacgactttccagaattcctgtgcgactat
tattacgatttttgcgacgttataccacaggattgtatacaattgaggaatttgatacta
agcgctcatcctcgggctgtcagacttcccgatccctctacactgaatctcaaggtcgac
atgctgcaagagatcacttacgtgcctcgtgttctcactaattttgctgctgtgataaaa
cccaacttgaaaaatcagcttgatctttatctagagactcgaacgcccgttactttcctt
tcggatctcacgaccaatcttcacgttcgtcaagaaaatggaacgcacattaatattccc
ttaataaatgcgattgtcctctacgtcggttcccatgctattgctctcatgagaaaccaa
ggacacgccttcgacgtgtcaactatcgcttcttcttctcacatggacgtatttcaaaaa
cttgctgtcgatctcgaccctgcgagccgctattccttcttcaatgcaatcgccaatcag
ctgcgctatccgagcactcatacctactatttttgttgtattcttctctgcctcttcgct
gaggccaagactgaggaaatacaagagcacataacgatagtgctgcttgaacgtctcatc
gtcaatcaaccccatccttggggattgctcattaccttcatcgaacttgtcaaaaatcca
aaatacgcattctggagtcttgagttcgtccgcagtgcttctgaaatcgaaaagttcatc
gagactattacgcatttatacatgattcaacagcaagtagagccgccttcgaagccgcag
gaacccgagttgtga
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integrated database retrieval system
