Venturia canescens: 122409044
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Entry
122409044 CDS
T09386
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
vcan
Venturia canescens
Pathway
vcan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122409044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcan03041
]
122409044
Enzymes [BR:
vcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122409044
Spliceosome [BR:
vcan03041
]
Complex C
Other components
Step II factors
122409044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
ResIII
SLFN-g3_helicase
AAA_30
AAA_24
Sigma54_activ_2
ABC_tran
ATPase
AAA_16
PhoH
Sigma54_activat
AAA_7
SRP54
ATPase_2
cobW
AAA_23
Motif
Other DBs
NCBI-GeneID:
122409044
NCBI-ProteinID:
XP_043272192
LinkDB
All DBs
Position
4:18716961..18721398
Genome browser
AA seq
1125 aa
AA seq
DB search
MSETPDLFRLEGSDGTETGGLFIRKQASDHTFKKPSVSQFGLDKLAERKRRENSQEPGSS
RSESKKKSKHESKGDRRYRSHEEETPTYTGGVNAEAQRKLESRLKRQRLDAQDRMRRDRE
RSHSRDRRDRTPRFRDEPQTPKIRARDPTSRSNWDDDDDEEPRRSSWDHPTPKLYGSKDY
RESARSEFTPSYKYNPWHRDHRGGSGATPMIDGEEKALWEEEQRRLDREWYALDDGENQR
FADVSEEYTRKKEMELEAKREKRVSAQQRQINKDNELWERNRMLTSGVVSSLEHDDDPDD
EGEARVHLLVHNVVPPFLDGRIVFTKQPEPVVPVRDPSSDMALVARKGSALVRAYREQKE
RRRAQKKHWELAGTHLGNIMGVHDNKKEDREQHGPETDYKAGQKYARHIGAGQVSSGESR
QRTIQHQRRSLPVFAVRQELLNIIRENSVVIIVGETGSGKTTQLTQYLHEDGYSKNGIIG
CTQPRRVAAMSVAKRVSDEMDTALGDKVGYAIRFEDCTSKETVIKYMTDGILLRESLREG
DLDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFAAFFGNAAT
YEIPGRTYPVEVLHSKNAVEDYVDAAVKQVLQIHLQPRSGDVLVFMPGQEDIEVTCESLK
ERLEEIDSAPELSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAETSLTVDGIVFVV
DSGYCKLKVYNPRIGMDALQVYPVSRANADQRSGRAGRTGPGHCYRLYTRRQYLDELLLT
GVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWILGALDHTGRLTA
LGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKGREEDSDSAREKF
QVPESDHLTYLNVYKQWKLNGYSSSWCNEHFIHAKAMRKVREVRQQLEEILKQQKMEVVS
CGTDWDVVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFGMGFTPDYVVYHE
LVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRSGHAKRRQALQHLHEMEGQMKEAEE
EMRVRAQEQLEREQASVRKKEILTPGIREPGTPASYRKTPGRLGL
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaactccagatttgtttaggttagaaggatccgatggaaccgaaaccggagga
ttgttcattcgtaaacaagcgtctgatcacaccttcaaaaaaccaagcgtgtcacaattc
ggtctagacaaattggcagaacgcaaaagacgagaaaattctcaagagcctggaagtagc
cgtagtgaatcaaagaaaaaatcaaaacatgaatccaaaggtgatcgtagatatagatca
catgaggaagaaacacctacttacacaggcggagtcaatgccgaagctcaaagaaaattg
gaaagtcgtctcaaacgacagagactcgatgcccaggatcgcatgagacgagatcgagag
agaagtcacagtcgagatagacgagatagaactccaagatttcgagacgaacctcaaact
cctaaaattcgtgcaagagatccaacttcaagaagcaactgggacgacgacgatgacgaa
gagccacgtagatctagctgggatcatcccactcctaagctttatggttccaaagattac
agagaaagcgcaagaagtgaatttactccgtcatacaagtacaatccgtggcatcgagat
cacagaggcggttctggtgctacacctatgatagacggagaggaaaaagcactttgggaa
gaagaacagcgaaggttggatcgcgaatggtacgcattagacgatggagaaaaccagcgt
tttgccgatgtctcggaagaatatacgagaaaaaaggaaatggaactagaagcaaaacga
gaaaagcgggtttccgcgcagcaaaggcagatcaacaaggacaacgaactttgggaaaga
aatcgaatgttgacttcgggtgttgtgagctcactggaacacgatgatgatccggacgat
gagggagaagctcgagttcatctcctcgttcacaacgtcgttccaccgtttcttgacggt
cgaattgttttcacgaagcaaccagagccggttgtaccggtacgagatccaagttcggat
atggctttggttgcgcgtaaaggttccgccttggtccgagcatatcgagagcaaaaagag
cgtcgtcgtgcgcagaaaaaacactgggagttggctggcactcatctcggcaacataatg
ggagtgcacgacaataaaaaagaggatcgagaacaacatggtccggaaacggattacaaa
gctggacaaaagtacgcacgacatattggagctggacaagtatcgagcggggaatcgaga
caacgcacgatacaacatcaaagacggagtctccccgttttcgccgttcgacaagaattg
ctcaacattatcagagaaaacagcgttgtcattatcgtgggcgaaaccggtagcggaaaa
actactcaacttactcaatatttgcatgaagacggttacagcaaaaatggcattatcggg
tgtacgcaacccaggagagtcgctgcaatgtcggtcgccaagagggtatccgatgaaatg
gacacagctctgggtgataaagtcggttatgctatccgtttcgaggactgcacatccaaa
gaaacggtaataaagtatatgactgacggtatactgctccgtgagagtcttcgagaagga
gatctcgatcgttacagtgttataataatggacgaagctcacgagcgatctctctccacc
gacgtgctttttgggttacttcgagaggttgtagcgagacgtcacgatttgaaattgatc
gtaacctcggcgacgatggattcgagtaaatttgcagcatttttcggaaatgctgcaacc
tacgagataccagggcgcacatatccggtggaagtcttacattcgaaaaatgcagtggag
gattacgtcgatgctgcggtgaagcaagtattgcagatacatttgcagcctcgtagcggt
gacgttttagtgtttatgcctggacaggaggacatcgaagtgacgtgtgagtcgctgaag
gaaagactcgaggaaatcgattccgctccggaattgtcgatactgccgatttattcacaa
ctgccgtcggatcttcaggcaaaaatatttcagcgttcggagggtggtcttagaaaatgt
gttgttgcgacaaacatagcagagacttcgttgacggtagacggtatcgttttcgtcgtg
gattcaggatactgcaagctgaaagtttacaatcctcgaatcggtatggacgcgctgcaa
gtgtatccggtttcgcgtgcgaacgcggaccaaagatcgggtcgcgctggtcgtacgggg
cccggacattgctaccgcttgtacacgcgacggcagtacctcgacgagcttttgttaacc
ggagtgccggaaattcaacgtacgaatttagcaaacaccgtattactattgaaatctttg
ggcgtccaagatttattggcattccattttatggatccaccgccacaggataatattctc
aactctttgtaccaattgtggatcctgggagccctcgatcacacgggaagactgactgct
ctgggacgtcaaatggctgaattccctcttgatccaccgcaatgtcaaatgttgatcgtt
gcctctcagctcggttgtaccgccgatattctcatcatagtttcgatgctctcggtacct
tcgatcttttatagaccgaaagggcgcgaggaggactcggactcggcgagagaaaagttc
caagttcctgaatctgatcacttgacgtatctcaatgtttataaacagtggaaattgaac
ggatattcgagctcctggtgcaacgaacatttcattcacgcgaaagcgatgagaaaagta
cgagaagtacggcaacaattggaagagatattgaagcaacagaaaatggaagttgtcagt
tgcggtacggattgggacgtcgtaagaaagtgcatttgctccgcttattttcatcaagct
gcacgcctcaaaggaatcggtgaatacgtcaattgccgaaccggaatgccctgccatctt
catccaacttccgcacttttcggtatgggcttcacacccgattacgttgtttaccacgag
ctcgttatgaccgctaaagaatacatgcaatgcgttaccgccgtcgatgggcactggctc
gccgaactcggaccgatgtttttcagcgtcaaagaaactggacggagcggtcacgccaag
aggcgacaagctcttcaacaccttcacgaaatggagggacaaatgaaagaagccgaagag
gaaatgcgggtccgggctcaagaacaattagaacgcgaacaagcttccgtgagaaaaaaa
gaaattctcacacctggtatccgagaaccaggaactcccgcttcctaccgcaaaacaccc
ggacgactgggtctgtaa
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integrated database retrieval system
