Venturia canescens: 122409047
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Entry
122409047 CDS
T09386
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vcan
Venturia canescens
Pathway
vcan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122409047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcan03041
]
122409047
03009 Ribosome biogenesis [BR:
vcan03009
]
122409047
Enzymes [BR:
vcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122409047
Spliceosome [BR:
vcan03041
]
Complex A
U2 snRNP components
U2 related factors
122409047
Complex B
122409047
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122409047
Ribosome biogenesis [BR:
vcan03009
]
Eukaryotic type
90S particles
Helicases
122409047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
nSTAND3
AAA_22
SRP54
Flavi_DEAD
ResIII
ABC_tran
T2SSE
AAA_25
TsaE
AAA_30
Motif
Other DBs
NCBI-GeneID:
122409047
NCBI-ProteinID:
XP_043272203
EnsemblRapid:
LOC122409047
LinkDB
All DBs
Position
1:26438411..26444930
Genome browser
AA seq
716 aa
AA seq
DB search
MSKRRIEVVDPYVKRRADGQENVPSPVQVGNSTSAQLNPYTGLPYTRRYHDFLKKRITLP
VFEYRSDFMRLLAQHQCIVLVGETGSGKTTQIPQWCVEYSISVGKKGVACTQPRRVAAMS
VAQRVSEEMDVILGMQVGYSIRFEDCSSVHTVLKYMTDGMLLREGMSDPMLEAYQVILLD
EAHERTLATDLLMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVE
IFYTPEPERDYLEAAIRTVVQIHMCEEGSGDLLLFLTGQEEIEEACKRIKREMDNLGPDV
GELKCIPLYSTLPPNLQQRIFEAAPPNKPNGAVGRKVVVSTNIAETSLTIDGVVFVIDPG
FAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAFKNEMQDNTYP
EILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLGA
IMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAKKAADDAKMKFAHI
DGDHLTLLNVYHAFKQNLEDPTWCYDHFVNYRSLKSGDNVREQLCRIMDRFSLKRTSTDF
TSKDYYINIRKALVNGFFMQVAHLERTGHYQTIKDNQAVQLHPSSCLDHKPEWVIYNEFV
LTTKNYIRTVTDIKPDWLLTIAPQYYDLRNFPQCEAKAQLELIQTRLDSKQYQEGF
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacggaggattgaagttgtagacccttacgtcaagagacgagcagatggtcaa
gaaaatgtaccatcaccggtacaggtgggaaacagtacatcggcacagctgaatccctac
acaggactgccttacactcgtagatatcatgattttctgaagaagagaataaccttacca
gtctttgagtacagaagtgactttatgagactattggcacaacatcagtgtatcgtactg
gtgggtgagacaggttctgggaaaacaactcagataccgcaatggtgcgtggaatattca
atctctgtgggaaaaaaaggagtagcttgtacgcaacccagaagagtagcagcgatgtcg
gtggcacaacgagtttctgaagaaatggatgtaattttgggaatgcaagttggttacagt
attcgttttgaggattgtagctcggttcatacagtcctaaaatacatgaccgatggtatg
ttattgcgggaaggtatgtctgatcccatgctcgaagcttatcaagtaatattattggac
gaagctcacgagaggacacttgcaaccgatttactcatgggagtactgaaagaagtaata
aaacaaagatccgatttgaaactcgtaattatgagcgcgacccttgatgctggcaaattt
caacaatactttgataatgcgcctttgatgaatgttcctggccgaacacatcctgttgaa
atattttacacacccgagccagagcgcgattatctcgaagctgctataagaacagttgta
cagatacacatgtgcgaagagggtagcggtgatcttttgctgtttcttacgggtcaagaa
gaaatcgaggaagcttgcaagagaatcaaacgtgaaatggacaacttaggacccgatgtc
ggagagctcaaatgcattccactctattccaccctgccaccgaatttgcaacaacgaata
tttgaggcagcccctcccaataaacccaatggtgccgttggaagaaaagtcgttgtttca
accaatatcgccgaaacttcgttgaccatcgatggtgtagtttttgtcatcgatcctggg
tttgccaaacaaaaggtttacaatccaaggattcgagttgaatcactcctagtatcaccg
attagcaaagcttcggctcaacagagagctggacgagcgggtcgtacgcgacccggaaaa
tgcttcaggttgtataccgaaaaagcattcaaaaacgagatgcaggacaatacttatccc
gaaattctacgatctaatttgggaagtgttgttttacaacttaaaaaacttggcattgat
gatctggttcactttgacttcatggatccaccggctcctgaaactctaatgcgagctctg
gaactgttaaattatcttgctgctcttgacgacgatggaaatttgacggatttgggagct
ataatggcggaatttccactcgatcctcaacttgcgaaaatgcttatagcatcttgtaat
cacaattgtagcaacgagatactcagtataacagcgatgctgtcagtcccacagtgcttt
gtgagaccgaacgaggccaagaaagcagccgatgacgcaaaaatgaaatttgctcatatc
gatggtgaccatttgacgttattgaatgtttatcacgctttcaaacaaaatctggaagat
ccaacatggtgttacgaccatttcgtgaattatcgatccttgaagagcggtgataatgtc
agagaacaattgtgccgaatcatggacagattctcgctcaagcgtacctctaccgatttc
acttcgaaggattattacatcaatattagaaaagccctcgtcaatggttttttcatgcag
gttgcacacttggagagaaccggtcattatcaaacgatcaaagacaatcaagctgtacag
ttacatccaagcagctgtttggatcataagcccgaatgggttatatacaatgagttcgtt
ttaacgacgaaaaattatattaggacagtgactgacataaaacccgattggttactgacg
attgcaccacagtactacgatttgcgaaatttcccgcagtgcgaggcgaaagcacagctg
gaattaatacaaactcgattagactcgaaacagtatcaagagggattttaa
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integrated database retrieval system
