Venturia canescens: 122409564
Help
Entry
122409564 CDS
T09386
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
vcan
Venturia canescens
Pathway
vcan03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122409564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122409564
03041 Spliceosome [BR:
vcan03041
]
122409564
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122409564
Spliceosome [BR:
vcan03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122409564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
ATAD4
Motif
Other DBs
NCBI-GeneID:
122409564
NCBI-ProteinID:
XP_043273169
LinkDB
All DBs
Position
4:22811737..22815134
Genome browser
AA seq
668 aa
AA seq
DB search
MGKETDPESPKKRRKTVTTAPGTPTKDGDMYKTIISYEEKEAMDRSPEEDSKNFLSCCET
VRRGMNEIAQLKASDDPSAKDQVRELQIQTSLAFLELKKLNRMEKFRTKFARDSLTAAKS
AVDSKHLQLQNLLYEVMHLKKEVIKCLQFKSKDESIELVSLEEFYREAPETILQKDITDM
NAHQLKLARLEWELMQRKQLAALCDELSDSKKGVASSIETKQERLDNLGPQLRTILEASK
PLQDSFGLPLDKIHQEHQKAALLVSPLYVLYAKTSAYRDAYEPLLCVSVEGDEDEAKRIN
NQENSQDSDSDQETQSESVVEEIPVHKKRHHRLSREARQEEKKMRLLQRHPLSVQIVITL
SNEIKLTLKFFYMTYLRVITVESKLDTKDCGGITAGDMLISESVLRELYPKDLGLDSPNP
ANNYQLMRHNLPSFDSLGVGIPYRWAQRMAGLHFLSLDVNEQKRTNQELAQDSTESVLRE
IKRRVKARLELCNEIKLLEEGHFPPVAIGTEPMPEKVVTEVHRFTTATWKSYSTSPDTLG
FCKKGLVTPVDMFYEAILRRGGYELIARIAIKPDYPKVSPVFSISLNPSIPSSIDVVRDI
EREVNVMWKKPPTLSLQLQRLRACFDIYLETEKLVPSREQIFFHSVKGRTRARPYKYVAL
GGGVFTQR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagaaactgatccggaaagcccgaaaaaaagaagaaaaaccgtgaccaccgct
cctggaactcctaccaaggacggagatatgtacaaaaccataataagctatgaagagaaa
gaagctatggataggtcaccagaagaagattcaaagaattttctttcctgctgtgagaca
gttcgcagaggaatgaatgaaattgcacagctcaaggctagcgacgatccaagcgctaaa
gatcaggtcagagaattacaaatccaaacatctcttgcatttcttgaattgaagaaactc
aacagaatggaaaagttcagaaccaagtttgcaagagattctttgacagctgcaaaaagt
gctgttgacagcaaacatctccaactacaaaacttgctgtatgaagtaatgcatctaaaa
aaagaagtcataaagtgtttacaattcaagtccaaagatgagtctatagaactggtgtcg
ttggaagaattctatagagaagcaccagaaactattttacaaaaagacataactgatatg
aatgcccaccagctgaaacttgctcgcctcgaatgggaattgatgcaaagaaaacaatta
gcagcgctgtgcgacgagctatcggacagtaaaaaaggtgttgcctcgagtatagaaacg
aagcaggagcgactggacaatctcgggcctcagcttcgtacgattctcgaagcgagcaag
cctcttcaggatagttttggtttgcctttagataagattcaccaggagcatcaaaaagct
gcattgctcgtttcgcctctgtatgtactttatgccaaaacttcagcatacagagacgca
tatgaaccacttttatgcgtgagcgtcgagggtgacgaggatgaggcaaaacgaataaat
aatcaggaaaattcccaagactctgattcggatcaagaaacacaatcggaaagtgtagta
gaagaaattccagttcataagaagagacaccacagattatcgcgcgaggcaagacaggaa
gagaaaaaaatgcgtctccttcagaggcacccgctgagtgttcaaatcgtcatcacttta
tccaatgaaatcaaactcactctcaagtttttctacatgacttacttaagagtcattacc
gtggaatcgaaattggatactaaagattgcggaggtatcacagccggagacatgctgatt
tccgagtcggtacttcgtgaattgtatccaaaagatctgggtcttgacagtccaaatcct
gcgaataattatcaactcatgcgacacaatcttccatcattcgattcccttggagtcgga
attccttatcgatgggctcaacgaatggctggactgcattttctgtcgttagatgtcaac
gagcaaaagcgaacgaatcaagaacttgcgcaggatagtacagagagtgttttacgagaa
ataaaacgacgtgttaaagcacgcctcgaattgtgtaacgaaataaaactattggaggaa
ggacattttccccctgtggcaataggaactgaaccgatgccggaaaaagttgtaacggaa
gttcatcgattcacgaccgcaacgtggaaaagttattccaccagtccggatactctgggc
ttctgtaaaaaggggctagtcacaccggtcgacatgttttacgaagcgatacttcgacgc
gggggatatgaattgatcgcacgaatcgccataaagccggattacccaaaagtctcaccg
gtattcagcataagtctgaatccttcgattccatcgtcgatcgatgtagttagagatata
gaacgtgaggttaacgtaatgtggaaaaagccgcctacactttcgttacaattacaacgt
cttcgcgcctgcttcgacatttaccttgaaacagagaaactcgtaccctcgcgcgagcag
atattcttccattcggtaaaaggacgaactcgtgctcgaccgtacaagtacgttgcgtta
ggagggggcgtattcacacaacgttga
DBGET
integrated database retrieval system