Venturia canescens: 122409778
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Entry
122409778 CDS
T09386
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
vcan
Venturia canescens
Pathway
vcan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122409778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcan03400
]
122409778
DNA repair and recombination proteins [BR:
vcan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122409778
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
122409778
NCBI-ProteinID:
XP_043273505
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Position
4:complement(9231773..9238130)
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AA seq
1143 aa
AA seq
DB search
MSKQNTLLNYFTSPKNPKPATGKTPTSKGKTGVNNKSTPKSKSTAINSPKPSKSKEIIAK
EKDSTPTRKRPLKERNRDEETDNVKPKRRRIIVPEVDSDSADSGDEYVPESLNESSEVEL
TGEEASETDITPDESDEETPKKKKKSSRSTGNVRSKKSQAGNGTTQTSGDTKSNVLPAVS
AISGPASGADSWPHLHYDFLQPNKIKDIKKRSASDPNYDPKTLYVPLDFLNNQTPGMRQW
WELKSKHFDCVLFFKVGKFYELYHMDAVIGANVLGISYMRGEWAHSGFPEIAYGRFSGNL
IERGYKVARVEQTETPDMVTERCRKAGKTTKFDKVVRREICQVSTRGTRVFTPQDSEIVT
PQSSYLMTLVEKHDSENNLPSYGVCFLDTTIGEFNLGQFQDDRCNSRLLTLFSHHPPAQL
VYERGNLSQATMKILDNMLVTSMKEPLQKDVQFWSATTTLEKLHNAEYFKDQSNGTVAWP
EGLKPYLSEGDSLGLTPAENKELAVNALGGCVYLLRDYLLDQQILAQKRFNTYIPPDHNR
ESIDEGFNSVSTMVLDALTINNLKILTGEGSLIATLDHCCTAFGKRLLRELICRPSCQKT
VIIQRQQAITELLDHPDVVQKVRGILAKLPDLERLISKIHTYGNALKAADHPDSRAIMFE
RDTYSKRKIIDFLSVLDGFEEVLEVSSLFEDFSSDLIKLSMKTAPDGEFPTLRETLDFFK
VAFDHEEAKKEGCIIPKQGVDSEYDAIFAEIEDIEKEAKKYLQSQVKHFGVKVTFHGTDK
KRYQIEIPDSQVKKIGPGYELQSQRKGFKRYYTAEGKELLTRQMNAEDERDKVLKDLNRR
IFAKFSEKYDLWSVAAYKIAIMDVLISLAEYARCGDMCVPEIIDEKICTQIKDGKHPCIM
SESFVPNDTSLAADGNASLVILTGPNMGGKSTLMRQVGLITIMAQMGCYVPASACRLSLA
DRIFTRLGANDDILAGQSTFLVELSETATILQHASPHSLVLLDELGRGTSTYDGTAIAAA
VVDALTKLKCRTLFSTHYHSLVEDYKTNKDVTLAHMACMVETEEEEISQETVTFLYKLSE
GACPKSYGFNAARLAGVPAYVTKRAHEIATKLEREVKQKHMFVALCNPGDKSFKNLVEAL
AAM
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacaaaacacattgctcaattattttacatcaccaaaaaatccgaagccggca
acggggaaaacaccgacttcaaagggcaaaaccggtgtcaacaataaatctactccgaaa
tctaaatctacggcgataaattctcccaagccatcgaagagcaaagaaataattgctaag
gagaaggattccacgcctacaagaaaaagacctttaaaagaacgaaatagagatgaagag
acggacaatgtgaagccaaagaggcggaggataattgtcccagaagtggatagcgattcg
gcagattctggagatgaatacgtacccgaatcgttgaatgagtcttcagaagtagagctt
actggagaagaggcttcagaaacagacattactccagatgaatctgatgaagaaacaccc
aagaaaaagaaaaaatcatcaagatccacaggcaatgttcgcagtaagaaaagccaagca
ggaaatgggactacgcagacttctggagatacgaaatcgaatgttttgccagctgtttct
gcgatttcgggaccggcttcaggtgcagattcatggcctcatttgcattatgatttcctt
caaccaaataaaataaaagatatcaaaaaacgatctgccagtgatccgaattatgatcct
aagacgctttatgtgcctctggattttctcaacaatcaaacaccgggaatgcgacaatgg
tgggaattaaagagtaaacatttcgattgcgtgctcttcttcaaagttggcaaattttat
gagctgtatcatatggatgcagttattggtgccaatgttcttggtatttcatatatgcgg
ggtgaatgggctcattcgggtttcccagaaatcgcatatggacgtttttcgggaaatctt
atcgaacgaggatacaaagttgctcgtgttgaacagaccgagacccccgatatggttacc
gaacgttgtcgcaaggcggggaaaacaacgaaatttgacaaagttgtgagacgtgaaata
tgccaggtgagcacgagaggcactcgagttttcactcctcaagattcagaaatcgtaacg
ccgcagtcgagttatcttatgacgctggttgagaaacacgattctgaaaataacttgcca
tcctacggagtgtgtttcctggacaccacgatcggtgaatttaatctcggccaatttcaa
gacgatcgttgcaactctcgattgctcactcttttctctcatcatccgccggctcaattg
gtttacgagcgtggaaatttgtcccaagcaaccatgaaaatactcgacaatatgcttgtc
acttcgatgaaagagcccctgcagaaagacgtacaattttggtcggcaaccacgacactt
gagaaacttcacaacgccgaatacttcaaagatcagtcgaatggcacagttgcatggcct
gaaggcctcaaaccgtacctgagcgaaggtgacagcctaggcctcacgccagctgaaaac
aaagaactggctgtcaatgctctcggcggatgcgtttatctgttgagagattatcttttg
gatcagcaaatactagcgcaaaaacgattcaacacttacatacctccggatcacaataga
gaatcgattgatgagggcttcaattcagtctcaaccatggtattggatgctctaacaata
aacaacttaaaaattctcacaggcgaaggatcacttatcgcaacactggatcattgttgt
acggctttcggtaaaagattgttacgcgaattaatctgcagaccgtcgtgccagaaaaca
gtgataattcaacgtcaacaagctattacagaattgctggatcatcccgatgtcgtccaa
aaagttcgcggcattttggctaagttacctgatctcgaaagactcataagcaaaatacat
acttatggaaacgctttgaaagcagcggatcatcctgactcgcgtgctattatgtttgag
agagatacttactctaaaagaaagattatcgattttcttagcgttttagacggttttgaa
gaagttttggaggtttcgtctctttttgaagatttcagctccgatttgataaaactgagc
atgaagactgctcctgacggtgaatttccgacattgcgcgagactctagacttctttaag
gtggcgtttgatcacgaagaagcaaagaaggaaggttgcataataccgaaacaaggagtg
gactccgaatacgatgcaatattcgcggaaattgaggacattgagaaggaagctaaaaaa
tacttacagagtcaggtgaagcatttcggagttaaagttactttccatgggaccgataaa
aagcgatatcaaattgagattccggacagtcaagtgaagaaaattggtcctggatatgaa
cttcagtcacagaggaaaggatttaagcgttactacactgctgaaggcaaagaactattg
acccgacaaatgaacgctgaagacgagcgtgacaaagttctcaaggatttgaatcggcga
attttcgcgaaattcagtgaaaagtatgatttgtggagcgttgctgcttataagattgct
attatggatgtactcatttccctcgccgaatacgctcgttgtggcgacatgtgcgtccca
gaaatcatcgacgaaaagatatgtacgcaaatcaaagatggcaaacacccatgcataatg
agtgaaagtttcgtaccgaacgatacttctttagctgctgacggaaacgcttctcttgtt
attcttaccggtcctaacatgggcggaaagtccactctcatgcgacaagttggactaatt
actattatggcccaaatgggttgttacgtgccagcgagtgcttgccgcttgagcttggcg
gaccgaatttttacgagactcggtgcgaacgatgatattttagctggccaaagtacgttt
ttggtagagttgagcgaaacggcgactattcttcaacacgccagtcctcattctttggtt
ttgttggatgaactcggacgcggtacatcaacttacgatggtacagcgattgcagcggcg
gtagtcgatgccttgaccaaactaaagtgtcgcactttgttctcaactcattatcattcg
ctggtcgaagattacaagacaaacaaggacgtaactttggcccacatggcgtgtatggtt
gagacggaggaagaagaaatatctcaagaaacagtgactttcctgtacaagttgagcgaa
ggagcttgccccaaatcttatggtttcaatgccgctcgtctcgctggagtacctgcatac
gtcaccaaacgagcgcatgaaattgcaactaaactcgaacgggaagtcaaacagaaacat
atgtttgtagcgctttgtaaccccggtgacaaatccttcaaaaatcttgttgaagctctt
gctgccatgtaa
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