Venturia canescens: 122410282
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Entry
122410282 CDS
T09386
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
vcan
Venturia canescens
Pathway
vcan03020
RNA polymerase
vcan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122410282
09124 Replication and repair
03420 Nucleotide excision repair
122410282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcan03021
]
122410282
03400 DNA repair and recombination proteins [BR:
vcan03400
]
122410282
Enzymes [BR:
vcan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122410282
Transcription machinery [BR:
vcan03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122410282
DNA repair and recombination proteins [BR:
vcan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122410282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
122410282
NCBI-ProteinID:
XP_043274363
LinkDB
All DBs
Position
4:24865869..24874249
Genome browser
AA seq
1906 aa
AA seq
DB search
MATNDSKAPVRMVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFMTKTIKILRCVCYYCSKLLVTPSNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDITKEGQEIAPTDRKPGHGGCGRYQ
PNFRRSGLDVSAEWKHINEDSQDRKIVLTAERAWEILKHITDEDSFILGMDPKFARPDWM
IVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKTNNELLRNEQAGGAAHVIMENVK
LLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPNWDGKMPQPSILKPKSLWTGKQIFSLIIPGNVNLIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKSTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINHWLLLEGHSIGIGDTIADPDTYKEIQKAIRKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFSEDIVREMMGSGEVISELEREWDQLNRDRAVLRE
IFPSGESKVVQPCNLQRMIWNVQKIFHINKRVPTDLSPMRVIQGVKDLLEKCIIVAGEDR
LSKQANENATLLFRCLVRSTLCTKCVSEQFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSK
FQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITDTGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGGAGMFFGSAAT
PSMSPQMTPWNQMGSTPGYGASSMSPTLGSGMTPGGACFSPSGASDASGLSPAYSAYSPQ
PGSPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPN
YSPTSPSYSPTSPGYSPASPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPT
SHSYSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPSSPNY
TPGSPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPTS
PTYSPTSPTYSPTSPSYSPSSPQHTAAGSTRYSPSSPNYSPTSPTYSPSSPQYSPSSTKY
SPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggccacgaacgactccaaggctcccgtgcggatggttaaaagggtacaattcggtatc
ctttcgcccgacgaaattcgtcgcatgtcagtgaccgatggcgggatacgcttcccagaa
acgatggagggtggaagaccaaaactgggcgggttaatggatccacggcagggcgtgata
gatagaaattcccgatgtcagacgtgcgcaggcaatatgaccgagtgtccaggtcatttt
ggtcacatagatttggcaaagccagtatttcacgttggtttcatgacaaaaacgataaaa
atattacgttgcgtctgctattattgctcgaagcttttggttacaccttctaatccaaaa
atcaaagagatagtgatgaagacaaaaggtcaacctcgtaagagacttacctttgtttac
gatttgtgcaagagtaaaaatatttgcgagggcggtgacgagatggacataaccaaggag
ggtcaagagatagcaccgaccgatcgtaaacctggccacggtggttgcggacgttatcag
ccaaatttccgtcgatccggtttggatgtgagcgcagaatggaaacacataaatgaggat
tctcaggatagaaaaatagtgttgacagctgagagagcatgggaaatattgaaacacata
acggacgaggattcgtttatactcggtatggatccaaaattcgctcgtcccgattggatg
atagtaacggtattgcctgtaccaccattgtcagtacgtccagcggtaataatgtacgga
tcagcgaaaaatcaggatgatcttactcacaagttggccgatataataaaaacgaacaac
gaattattgagaaacgagcaggcaggcggtgctgctcacgttattatggaaaatgtgaaa
ttgttacagttccatgtggcaacgttggttgacaacgacatgccgggtatgccaagagcg
atgcaaaaatcgggtaaaccattgaaagcgataaaagctcgcctcaagggtaaggaaggt
cgtatacggggcaatttgatgggtaaacgagttgatttttcggcccgtaccgtaattaca
ccggatccaaatttgcgtatcgatcaagtcggtgtaccccgtagtatagcacaaaatttg
accttcccggagatcgtaacgcctttcaacatcgacaagatgcaggagctcgtgagacgc
ggcaattctcagtaccccggagcgaaatatatagttcgagacaacggcgaacgcatagat
ttgagatttcatccaaaaccatcggatcttcacctgcagtgcggatatcgcgtggagcgg
cacatacgagacggtgatctagtgatcttcaatcgtcagccgacccttcacaaaatgagt
atgatgggacacagagtaaaggttttaccgtggagtacattccgtatgaatctcagttgt
acgtcaccgtacaacgccgatttcgacggcgatgagatgaatttacacgtgcctcaatca
atggaaacccgggctgaggttgagaatattcacgtaacgccgcgtcaaataataacgcca
caagctaacaagcccgtgatgggtatcgtacaggatacgttgaccgcggttcgtaaaatg
acaaagagggatgttttcattgagaaagaacagatgatgaatattctcatgtttttaccg
aattgggatggaaaaatgccacaaccgagtatacttaagccaaaatcattgtggacgggt
aaacaaatattttcgttgatcataccggggaatgtaaatttgataagaactcatagtacg
catccggacgaagaggacgacggtccttacaaatggatttcaccgggtgataccaaagtc
atggtcgaacacggtgagctggtgatgggaatactctgtaaatcgactcttggcacgtct
gccggttctttgctccatatatgtatgttggagctcggtcacgaggtgtgcggaagattt
tacggtaatatacaaacggttataaatcactggctcttgctcgaagggcattccatcggt
atcggggatactatcgcagatcccgacacgtacaaagagattcagaaggctataagaaaa
gctaaggaggatgtaatagaagttatacaaaaggcgcacaatatggaactggaaccgacg
cctggtaacacgctcaggcagacatttgagaatcaggtgaatcgtatattgaacgatgct
cgtgacaagaccggcggttccgccaagaaatcactcaccgaatacaacaatttgaaggcg
atggtggtcgcaggctcgaaaggctcaaacatcaacatatcgcaggttatcgcttgtgtc
ggacaacaaaacgtcgaaggtaaacgcataccgtttggttttcgtaaaagaactctgccg
cacttcatcaaggacgattacggtcccgagtcacgtggattcgttgagaactcgtatctc
gccgggcttaccccgtcagaattttattttcacgctatgggcggacgggagggtctcatc
gatacagctgtcaagactgccgagaccggttatattcagagacggttgatcaaagctatg
gagtcggtaatggttcattacgacggtactgtaagaaattcggtcggacaacttatccag
ttgcgttacggagaggacggactttgcggtgagaccgtggagtttcaaaatttaccgacc
atcaagctgagcaacaaggctttcgagaaaaaattcaaatttgatccgaccaacgagcga
tatctgaggcgcatattcagcgaggatatcgtacgtgaaatgatgggttcgggagaagtt
atatccgagcttgaacgcgaatgggaccaattgaatcgagatcgcgctgttctccgtgaa
atttttcccagcggcgagtccaaagtcgttcaaccgtgcaacttgcaacgcatgatttgg
aacgttcaaaagatttttcacatcaacaaaagagtacctacggatttgagtccgatgagg
gttattcaaggcgttaaagatttattggaaaaatgcataatcgtcgctggcgaggaccgt
ttgagtaaacaggcaaatgagaacgcaacgttgctattccgttgtctcgttagatcgacc
ctgtgcaccaaatgcgtatccgaacagtttcgattgtcgagcgaggccttcgagtggttg
atcggtgaaattgagacgagattccaacaggcacaagtatcgcctggcgaaatggttggc
gcgcttgctgcccaatccctcggcgaacctgccacacagatgactctcaatacttttcat
tttgccggtgtctcatccaaaaacgtgacgctcggtgtaccgagattgaaggaaatcata
aacataagtaaaaaaccgaaagctccgtccttgactgtttttctcacgggtgctgccgcg
agggacgctgaaaaagcaaaaaacgttttgtgccgattggagcacactaccttgagaaaa
gtaaccgcgaatacggctatctattacgatcctgatccgcaaaatacggttatcgccgag
gatcaagaattcgtcaacgtttattacgaaatgcccgatttcgatcctaccaaaatttcc
ccttggttgttacgcatcgagcttgatcgcaagagaatgaccgataaaaaattgaccatg
gaacaaattgctgaaaaaatcaatgccggctttggtgatgatttgaattgtattttcaac
gacgataatgccgaaaaattggttctccgtataagaataatgaacagcgatgacagcaag
ttccaggacaccgaagaagaaactgtcgataaaatggaggacgatatgtttttgcgttgt
atcgaggctaatatgctgagcgacatgacgctccagggtatcgaagcaatcggcaaagtt
tacatgcatttgccacaaacggattcgaagaaacgaataataatcaccgacaccggcgaa
ttcaaagcaatcgccgaatggttgctcgaaaccgacggtacaagtttgatgaaagttctt
agtgaacgcgatgtcgatcccgtaagaactttcagcaacgatatctgcgaaatatttcaa
gtactcggtatcgaagccgtgcgaaaatcggttgagaaagagatgaacgccgtcctacag
ttttatggactttacgtcaattatcgccatctcgctcttctttgcgacgttatgaccgcg
aaaggacatctcatggccattacccgccacggtatcaatagacaagacaccggagccctc
atgagatgctcgttcgaagaaaccgttgacgttctcctcgatgctgcttcccacgccgag
gttgatcctatgagaggagtttccgagaatattataatgggacaattgccaagaattgga
actggttgtttcgatcttttgctggatgcggaaaagtgcaaagccggaattgaaattccc
atggcagtgggagcgggggtgatgggaggtgccggaatgttcttcggaagtgcagcaacg
ccgagcatgagtcctcaaatgacaccgtggaatcagatgggttcgacaccgggttacgga
gcttcgagcatgtcaccgacattgggaagcggaatgacgccgggtggtgcctgtttctca
ccgtcaggagcgtcggacgcatcgggtttgtcaccggcgtattcggcatattcgccgcag
ccaggaagtccaggaagtcccgggccgagtatgagtccgtatccgatgtctccggctggt
ggcgcatctccgagttattcacctacctcgccggcctatttgccaacttcaccgagcatg
acaccctccagtccgaattattctccgacgagtccgacgtattcgccgacaagtccgaac
tattcgccaacgagcccgagttattcaccgacgagtccgggctattcaccggcaagcccg
agctattcgccaacctcaccgagctactcgcctacctcgccgaattattccccaaccagt
ccaagctattcaccaacaagcccgagttattcacccaccagtcccagttattcgccaacc
agtcacagttattcaccgaccagtccgagttattccccgaccagtccgagttattcaccg
accagtccaggctactcaccaacgagtcctagttattcaccaacgagtccgggttattcg
ccgaccagtccgagttactcgccaaccagccccagctattctccatcctccccgaattac
acgccaggctcaccctcttactcaccaaccagtccgtcttactccccaagctcgccccaa
tattcaccagcgagtccgagctattcgcccagtagccccaaatattctcccacgagtccg
agctactcgccaacttcgccctccttcgccggtacttcacctcaatatacaccgacaagt
ccaacttattcaccaaccagtccgacttattcgccaaccagtccgagttattcacccagc
tcaccgcaacataccgccgccggaagtacgagatactcaccgagcagccccaattattca
cccaccagtccaacatattcaccatcgagtccgcagtactcaccctccagcaccaaatat
tcacctaccagtcctacttacactccaacgagtccgagctattcacccactagcccgact
tattcacctcccgttccaggttattctcccacaagtcctacttattcaccggcttcaccg
gcttacgagaccgacgattga
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integrated database retrieval system
