Venturia canescens: 122410746
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Entry
122410746 CDS
T09386
Name
(RefSeq) uncharacterized protein LOC122410746
KO
K03679
exosome complex component RRP4
Organism
vcan
Venturia canescens
Pathway
vcan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122410746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122410746
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122410746
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
122410746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
ECR1_N
EF-hand_7
EF-hand_1
KH_6
EF-hand_6
EF-hand_5
EF-hand_8
EF-hand_4
Motif
Other DBs
NCBI-GeneID:
122410746
NCBI-ProteinID:
XP_043275082
EnsemblRapid:
LOC122410746
LinkDB
All DBs
Position
5:11329070..11334175
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AA seq
624 aa
AA seq
DB search
MELGIDEYPDINVRLAVYRQDMNLIPLDSIQPRFYTPGEEITGQPDFLRGHGTYVDEEET
LRASVAGVLEKVNKLISVRPLKTRYQGEIGDVIVGRITEVQQSRWKVDTNSKLDSVLLLS
SVNLPGGELRRRSAEDEQTMRRYLQEGDLICAEVQNTYSDGSLSLHTRVLKYGKLSQGIM
LKVLPALIKPMKTHFHNLANGAVLILGTNGYVWIGANSSGTDRSEGGFTQDLSRVPQVDR
EVCARLRNCIIILAESNIVLTDTSVTYAFEESSKYNTNELLQPEPIAARMDACFTAFDKD
CDGFLSIDEFELICRALFRNDRGKIYGLEEKQLVEIYQIFDFKCDGKLDREEFEICWNRW
IKVCTRPRSAFLIVDVQNDFITGSLNIKNCAAQHDGSEVIEPINRLLETVQFDSVFYSLD
WHPVDHVSFIDNLHLREVDESSPISKEEARVYDTVTFRGPPTLKQRLWPRHCVQDSWGAE
LHKDLKIVDKAIKIYKGTNPEVDSYSVFWDNKKLTETTLSSQLQGKGATDIYICGLAYDV
CVGATAVDALTSGYRTILIDDCSRGVDLVDIEKTKAAVISSNGVIVNSSQVKAMIEGKDR
RPELGYKLALELKNSLLNRRRDYG
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggagctagggatagacgaatatcctgatataaacgtacgtttggcggtttatcgtcaa
gatatgaatttaatacctctcgacagtattcaaccacgattttacactcctggagaagaa
atcactggacaaccagacttcctgagaggccatggtacttacgtggatgaagaagaaact
ttgcgagcttctgttgcaggagtactggaaaaagttaacaaactaatatctgtcaggcct
ctgaaaacaagatatcaaggggaaattggtgacgttatcgttggtagaattacagaggtc
cagcaaagcagatggaaagtcgatactaattccaagcttgactccgttctattgttatcc
agtgttaacctaccgggaggagaacttagaagacgttcagcagaagatgagcagacaatg
cgacggtatctacaagagggagatttgatttgtgctgaggtgcaaaacacatattcagat
ggatcactgtctctgcacactcgtgtattaaaatatggaaaattatcgcaaggaataatg
ctgaaagtgctaccagctttaataaaaccaatgaaaacccattttcataatttagccaat
ggcgctgtattgattcttggtactaacggttatgtatggatcggagcgaacagctctggt
actgatcgttcggaaggtggattcactcaagatttatcaagggtgcctcaagttgatcgg
gaagtttgcgcaagattgcgtaattgtataattattcttgcagagtcaaatattgttttg
accgacacttctgtcacttatgcctttgaggaatcctccaaatacaataccaatgagttg
ctgcagccagagcctatagcggcgagaatggacgcgtgcttcaccgctttcgacaaagac
tgcgatggttttttgtccatcgacgaattcgagctaatatgccgggcactatttcgaaac
gatcgcggcaagatctacggtctcgaagaaaaacaattggtcgagatttatcagatattc
gatttcaaatgtgacggtaaactcgatcgagaagaatttgagatatgttggaatcgttgg
ataaaagtttgtactaggccacgaagtgcgtttctcatcgtcgatgtccagaatgacttc
ataacaggatcgttgaacataaaaaattgcgcggcacaacatgatggatctgaagtaatc
gagcccataaatcgcctcctcgagaccgtacaattcgattcggtgttttattccctcgat
tggcatcctgtcgatcacgtatcgttcatcgacaatttacatctgagagaagtcgacgag
tcgagtccaatttcgaaagaggaagcgcgagtctacgacaccgtgacatttcgagggcca
cctacactgaagcaacgtctgtggcctcgtcattgcgttcaagattcgtggggcgcggaa
cttcacaaagatctcaaaatagtcgataaagcgatcaaaatttacaaaggcacaaatcca
gaagttgattcttattcagtattttgggacaacaaaaaactgacggaaacgacactttcg
tctcaactacagggcaaaggtgcaaccgacatttatatttgtgggttggcctatgacgtt
tgtgttggagcgactgctgtcgacgctcttacgagcggttatcgaaccatactcatcgat
gactgtagccgcggtgttgacctcgttgacattgaaaaaaccaaagctgcggttatctcg
agtaacggtgttatcgttaattccagccaggtgaaagccatgatcgagggtaaagatcgt
aggcctgagctcggctataaacttgctcttgaacttaaaaactctttactcaataggcga
cgagattacggttaa
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