Venturia canescens: 122411511
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Entry
122411511 CDS
T09386
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vcan
Venturia canescens
Pathway
vcan03013
Nucleocytoplasmic transport
vcan03015
mRNA surveillance pathway
vcan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122411511
09122 Translation
03013 Nucleocytoplasmic transport
122411511
03015 mRNA surveillance pathway
122411511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122411511
03041 Spliceosome [BR:
vcan03041
]
122411511
Enzymes [BR:
vcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122411511
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122411511
Spliceosome [BR:
vcan03041
]
Complex C
Other components
EJC/TREX
122411511
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122411511
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122411511
NCBI-ProteinID:
XP_043276290
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All DBs
Position
5:6895918..6902124
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AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEAVVDGSGDVPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPAVKVGVFFGGLPIQKDEEVLKSTCPHIVVGTPGRILALVRSK
KLNLKHLKHFVLDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKEIRPVAKKFM
QDPMEIYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaacgacgatcttttggattacgaagatgaggaacagacggaggcagttgta
gatggatccggagatgttccagccaagaaggaagtcaagggaacttatgtttccatacac
agtagtggtttcagagatttcctcttaaaacctgaaatacttcgtgccattgtcgattgt
ggtttcgagcatccctctgaagtgcaacacgaatgcatccctcaagctgttcttggcatg
gacatattgtgccaagcgaaatctggtatgggaaaaacggcggtattcgtattggcgaca
cttcagcagctcgagctcaccgaaaatcaagtttacgtcctcgttatgtgtcatacgcga
gaactcgccttccaaataagcaaggaatacgaacgtttcagcaaatacatgccagccgta
aaggttggtgtatttttcggtggtttgcccattcaaaaagatgaggaagtactgaagagc
acttgtccacacatcgtcgttggaacacccgggcgaattctcgcccttgtacgaagcaaa
aaactcaacctgaaacacctcaagcatttcgtgctcgacgaatgcgataaaatgctggaa
ttactagacatgagaagagacgtacaagaaatattccgtagtacgccgcacggcaagcaa
gtcatgatgttcagcgcaacattgtccaaggaaattcggccagttgcgaagaaatttatg
caagaccctatggaaatctacgttgacgacgaggctaaactcactctccacggtcttcag
caacattacgttaaactcaaggaaaatgaaaagaacaagaaactgttcgaacttctggat
gttttggaattcaaccaggtcgttatttttgttaaatccgtacaaagatgtatggcactt
gctcaattgttaacggagcaaaatttccctgctattggaattcacagaggtatgactcag
gaggaacgtttgtcgaggtaccaacagttcaaagattttcagaagcgtatcctggtcgcg
actaatttattcggtcgaggtatggacattgaacgtgttaatatcgtatttaattacgat
atgcccgaggattctgacacgtatttacacagagttgcccgagctggacgttttggtacc
aaaggtctcgccataacactggtgagcgacgagagtgatgctaaaattctcaacgatgta
caagaaagatttgacgttaacattacggaattacctgacgaaattgatctcgcttcctac
attgaaggacgataa
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