Venturia canescens: 122411676
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Entry
122411676 CDS
T09386
Name
(RefSeq) nuclear pore complex protein Nup88 isoform X1
KO
K14318
nuclear pore complex protein Nup88
Organism
vcan
Venturia canescens
Pathway
vcan03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122411676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122411676
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122411676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
Seryl_tRNA_N
DUF919
BORCS7
Motif
Other DBs
NCBI-GeneID:
122411676
NCBI-ProteinID:
XP_043276600
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All DBs
Position
5:3089487..3155293
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AA seq
708 aa
AA seq
DB search
MNSCTDPLHLNEHKLFKHLKDGLPKSAKETRNILEIRDDVLYVWNADECCVLTLNIAAAC
SKPGESIPYQTLQPTDPPIMEITNLLVNETVTQLALWGNLGIVLLELPRRWGKDNAFQGG
NEVVSCMSHNLNACSSQLSTTEVRRVRWHPGSANDSHLLVLTSENTFQLYECELGSSPRL
MRTWKVGPTPLASPSKYMPTIESLGETAVDFDFATPTLKTENDGKEGGSKNYDWNQIDWP
ICVLCGNGEVLLVVGNILSGTQSKPVVLGSLTMYPPADDNYGIDSCSIMCIQTTPPIVVI
ATCTGKIYHAILLKDSFLPEEDETQTRSVYGSTYSLHTPVDALFVVECVELELGLLYSEQ
DRKYSCPIHLHSDKGNKSRYFCSHNAGIHAITLPMVSQLDEYVGAKDEEADLHLPTSLNP
SNSQYLVCTRTKHTVSEDATPVFGFGLLQQPCPVLIALLHTGVVVDLSVVDLDYLPRIDT
PKPMVSPNKKITREPFDTYIRNLLKHYSTSQPITKLGTRSKLSAKECLELLYRATHVFRD
QHFARLDEVRGEIEKKVRALKALKNHQLKELATLMETRNELQEMAEYLAERYEDIKDTQV
ELAGRAKEVLKLVNYKEPSMSSSERAEAAELKIMDDKVLELVVRIGQLKKKVENQSKHFE
TLEKIEKQKELVFSEKQEEAIKTNLKKMGKDISELISQVKVLEEDVDV
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaactcgtgcaccgatccgctacacctaaacgagcataaattgttcaaacatctgaag
gatggactgccaaaaagtgccaaagaaactcgcaacattctcgaaatacgcgatgacgtt
ctctacgtttggaacgccgacgagtgctgtgttctcacactcaacatcgccgcagcatgc
agcaaacccggcgaatcgattccgtatcaaacgctgcagcccacggaccccccgataatg
gagatcacaaatttgctcgtgaacgagacagtgacgcagctcgcgctgtggggcaatttg
ggtatcgtgcttctcgagttgccgagacgttggggcaaggacaacgctttccaaggaggg
aacgaggtcgtttcttgcatgagccacaatctcaacgcgtgcagctcacagctctccacc
accgaagtacgacgcgtcagatggcatccaggatccgccaacgactctcatctcttggtc
ctcacctccgaaaacaccttccagttgtacgagtgcgaattggggagttcgccgagactg
atgagaacgtggaaagtcggcccaacgcctttggcttcgccgtcgaagtacatgccgacg
atagaatcactgggcgaaaccgcggtggactttgatttcgcaacgccaacgttgaaaacg
gaaaacgatgggaaagagggaggaagcaaaaactacgattggaatcaaatcgattggccg
atttgcgttctgtgtggaaacggcgaagttctgctcgtcgttggaaatattttgtcagga
acccaatcgaagccagtcgtcctcggatctctcaccatgtacccgcccgccgacgataat
tatggcatcgattcgtgctcgataatgtgcattcaaactacccctccgatcgtcgtcatc
gcaacttgcacaggaaaaatttatcacgccatcctgttgaaagattccttccttcctgaa
gaagacgaaactcagacgcgatctgtgtacggctctacgtacagtctgcacacaccggtg
gatgcacttttcgtggtcgaatgtgtcgaattggagctcggccttttgtactccgaacag
gacagaaagtacagctgtccgattcacttgcacagcgacaaaggcaataaatcgagatat
ttctgttctcacaacgccgggattcacgccataactttaccgatggtgtcacagctggac
gagtacgtcggagcgaaagacgaggaggccgacttacatttacctacatctctgaatccc
tcgaactctcaatacctcgtctgcacgcgaacgaagcacacggtcagcgaggacgcaacg
ccagtttttggtttcggattactgcagcaaccctgcccagttctaatcgctttgcttcac
accggagtagtcgttgatctgtcggtcgtggatctcgattatttgccacgaatcgatacg
ccgaagccgatggttagcccgaacaaaaagatcacgagggagccgttcgacacttacatt
cgaaatctcctgaaacactattcgacgtctcagccaataacgaaattgggaacccgatca
aagctgtcagccaaagagtgcctcgagcttctttatcgagcgactcacgtgtttcgcgat
caacatttcgcacgactggacgaggttcgtggagagatagagaaaaaagtacgggctctg
aaggccttgaaaaatcatcaattgaaagaacttgcaacgttgatggagacgaggaacgag
ctacaagaaatggctgaatatttagctgaacgatacgaggacatcaaggacactcaagtc
gagttggccgggagagcgaaagaagttttgaagctggtgaattacaaagaaccctcgatg
tcgagttcggagcgagccgaggcggctgagctgaaaatcatggacgacaaagtactggag
ctcgtcgtacggataggccagttgaagaaaaaagttgaaaatcaatcgaaacatttcgaa
acactcgaaaagatcgagaagcagaaggaattggtattcagcgagaaacaggaagaggcg
attaaaacgaacctcaaaaagatgggcaaagatataagtgaattgatttcccaagttaaa
gtgctcgaggaagatgttgacgtctga
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