Venturia canescens: 122411726
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Entry
122411726 CDS
T09386
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vcan
Venturia canescens
Pathway
vcan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122411726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122411726
03041 Spliceosome [BR:
vcan03041
]
122411726
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122411726
Spliceosome [BR:
vcan03041
]
Complex B
Other components
Prp19-related factors
122411726
Complex C
122411726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_2
TPR_8
TPR_12
Mad3_BUB1_I
NRDE-2
TPR_10
ARM_TT21_C
RPN7
PPR
DHR-2_Lobe_A
ARM_TT21
SNAP
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
122411726
NCBI-ProteinID:
XP_043276685
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All DBs
Position
5:4347127..4351916
Genome browser
AA seq
853 aa
AA seq
DB search
MTKQTDPEGNAYAFNEEDLPYEEEILRNPYSVKHWQRYIDHLKTTKSTNLNVVFERALKE
LPGSYKLWHNYLRVRVKQVKGRCIADPIYEDVNNAFERALIFMHKMPRIWMDYCGFMTKQ
FHITRTRKIFDRSLRALPITQHQRIWPLYIDFVTKSNIPETAVRVFRRYLKLAPEETEEY
IDYLISIGRLDEAAVKLAQIVNQDDFISKHGKSNHQLWNELCDLISKNPSRIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEVAKNTNSDEEDEIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHK
RVMLYEGQPHEIINTYTEAVQTVEPQLAVGKLHTLWVAFAKFYEENGQVADARVVFEKAT
QVPYTKVDDLASVWCEWAELEIRHGNCKEALKLMHRATAMPSRKVAYHDETETVQMRLYK
SLKVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYE
KGIALFKWPNVYDIWNTYLTKFLHRYGGTKLERTRDLFEQCLEQCPSKYAKALYLLYAKL
EEDHGLARHAMSVYERATSAVLDEEKFEMFNIYIKKAADIYGVPKTREIYEKAIEVLNEE
NTREMCLRFAEMETKLGEVDRARTIYAHCSQICDPRVTSNFWQVWKEFEVRHGNEDTMRE
MLRIKRSVQAMYNTQVNMMSAQMLNSAAIQASGQTVDAMRLLDSKVAIPADGGGVQAAPK
DSIKFVRGVTEGSGAAEAHVVNPDEMNIDMDDDNDDDDDNEAEAEEDVPIEQQTIPSQVF
GSLKINEADTEAD
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgactaaacaaacagaccctgaaggaaatgcatatgcttttaacgaagaagatttgcct
tatgaggaagaaatattgagaaatccttattcagtgaaacactggcaaaggtatatagac
catttaaaaacaacgaaaagcaccaatttgaatgttgtgtttgagcgtgccctcaaagaa
ttaccaggaagttacaaactttggcacaattatttgcgagtcagagtgaaacaagtgaaa
ggacgttgcatagccgatccgatatacgaggatgtcaataatgctttcgaaagagccctc
atattcatgcacaaaatgcctcgtatatggatggactattgtggatttatgactaaacag
ttccacataacacgtaccagaaaaatttttgatcgttctctcagagcgctcccaattacc
cagcatcagcgcatctggcctttatacattgatttcgtcacgaaaagtaacattcctgag
acagctgtacgagtctttcgacgttatctgaagttggcccctgaggaaactgaagaatac
atagattatttaatatctattgggagattagacgaggcagcagtcaaactggctcaaata
gtcaaccaagacgattttatttcaaaacacggaaaatcgaatcatcaactgtggaatgag
ttgtgcgatttgatatcgaaaaatccgtcacgcatcaagtccctgaacgttgatgccatt
attcgaggaggcttaagacgatacaccgatcaattaggaccgctgtggaattccctcgcg
gattattatgttcgcagtgggttgttcgaacgagctcgagacatttatgaggaagctata
caaacagtaaccacggtgagagatttcacgcaagtctttgacgcgtacgctcaattcgag
gaactcagtctcagtaaacgaatggaagaagtagcaaaaaatacaaattcggacgaagaa
gacgagatagatttagaacttcgactagccagattcgagcatctcatggaaagacggttg
ttattgttgaattctgttttactacgccaaaatcctcataatgttcaagaatggcataaa
agagtgatgctctacgagggacaaccgcacgagattattaatacgtatacggaagcggtt
cagacggtggagcctcaactcgcagttggaaaactccacacactgtgggtcgcttttgcc
aaattttatgaagaaaacggtcaagtcgccgacgccagggtcgtctttgaaaaagcgacg
caagttccgtacacgaaagttgatgatttagcatctgtgtggtgcgaatgggcggaactg
gaaatcagacatgggaactgtaaagaagctctcaaactcatgcatagagcgactgcaatg
ccatcgcgaaaagtggcgtaccacgacgaaaccgagactgttcagatgaggctctacaag
tcacttaaagtatggtcaatgtacgctgatttggaagagagtttcggcacattcaaaacg
tgcaaagccgtgtacgacaaaataatcgatttaaaaatcgcgactcctcaaattatcata
aattacggacttttcctcgaagaaaataattactttgaggaagcgtttagggcgtacgaa
aaaggaatcgcgctgttcaagtggccaaacgtctacgacatttggaacacgtacctcacg
aaattccttcacagatatgggggcactaaattagaaagaactcgcgacttgttcgagcag
tgtctcgaacagtgtcccagcaaatatgcaaaagccttatatctattgtacgcaaaatta
gaagaggatcatggactcgcgagacacgcgatgtcagtttacgagcgagccacgagtgct
gttctcgacgaggaaaagttcgagatgttcaacatttacataaagaaagctgctgacatt
tacggcgtgccaaaaacacgagaaatatacgaaaaagctatcgaggtcctcaacgaggaa
aatactcgagaaatgtgtcttcggttcgctgaaatggaaacgaaactcggagaagtcgat
cgtgccagaacgatttacgcccattgcagtcagatctgcgatccgcgggttacttcaaac
ttttggcaagtttggaaagaattcgaagtccgtcacggtaacgaggacacgatgagagag
atgctgagaatcaaacgcagtgtccaagcaatgtacaatacacaagtcaatatgatgagc
gcccagatgctcaatagcgcagcgatccaagcttctggtcaaacagtcgatgcgatgcga
ttattggacagcaaagttgcgattcctgcagatggtggtggtgttcaagcggcaccgaaa
gatagtatcaaatttgtacgcggcgttacggaaggaagtggcgctgcggaagcgcacgtt
gtcaatcctgacgagatgaacatcgacatggatgatgacaacgacgatgatgacgataat
gaagcggaggctgaagaagatgttcccatcgagcagcagacgattccatcgcaagttttt
ggaagtttaaaaattaacgaagcagataccgaagctgattga
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