Venturia canescens: 122412743
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Entry
122412743 CDS
T09386
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
vcan
Venturia canescens
Pathway
vcan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122412743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcan03021
]
122412743
Enzymes [BR:
vcan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122412743
Transcription machinery [BR:
vcan03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122412743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF3658
Motif
Other DBs
NCBI-GeneID:
122412743
NCBI-ProteinID:
XP_043278475
LinkDB
All DBs
Position
6:9035266..9042190
Genome browser
AA seq
1691 aa
AA seq
DB search
MLRTVNPFGKTGQAKHLDPNRLMFSVFTANDIKSLSVLKICTPLSFNVLGHPLKGGLYDP
ALGPLNDHSDPCGTCGEGPLYCSGHFGHIDLPVPVVNPLFHKVLCTLLKLSCLKCYTLQI
PSYIKLLLNGKLRLMEEGFLNEVQGLEQEVHSAVANMNQVTEAELEFISDIIETYIETIR
NQKRYLQSNKTEGSFSARVLNMEWHSYIESVLKNYKAGRMCINCHNPIPRMTVLKNKILI
NQPALNDDTMMANRVIHRLETTYVMPDQSKKNLRGLWEQEADILKIIIPCLGLVDLEWPT
DIFFFEVIPVLPPIVRPVNILNSQLVEHPQTQVYKSIIQDCLVLRNIIQTIQDGDTHQLP
EEGRAVFEGIRGESAAEKLHHAWTSLQSNVDHLMDRELSKTTESANCQGLKQVIEKKEGI
IRMHMMGKRVNYAARSVITPDPNLNIDEIGVPEAFALKLTYPVPVTPWNVTELRKLIMNG
PEVHPGAVMIEGEDGFVKHLRGDDKTQLEAIAKRLLTSSSRKTFNGIKIVHRHLQNGDML
LLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNTHFPQNELARSEG
YFIANVSNQYLVPKDGTPLGGLIQDHVISGVRLTLRGNFFNREDYMQLVYSAIADKTGEL
VLLPPSILKPARLWSGKQIISTVILNLTPRGRAPINLEASAKIAPKDWQVRKARRWKCGE
EFTDQRTMSEAEVVIRGGELLSGVLDKTHYGATPYGLIHCLFELYGGTCSSKVLSAFGKL
FQTYLQISGFTLGVEDILVVRKSDQKRRDIIETCRQIGDQIQSSTLELDPDSSEEQLKSK
MEESYAKDPKFRAVVDRKYKSALDVFTNDINKTCLPAGLLKKFPHNNLQLMVQSGAKGST
VNTMQISCLLGQIELEGKRPPLMISGKSLPSFPAYDSSPRSGGFIDGRFMTGIQPQEFFF
HCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLTVNYDSTVRDSDGSLIQMCYGEDGLDI
PNSRFLRKEEMDFLVDNRKAIVDPALVEHLKDETTEKIRKLNKKIRKWRAKHGDTWTKWR
TSGFAKFSVLNNNPASSKHRQISSNCGRSKAALSLMKKWIKADEEVKKRLKDECARCPDP
ASSVYRQDLQFGVLTEKMEALMEEYLNEKSRRFTTSIGKEEVRDLLCTKIMKSLCPPGEP
VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIPFKK
HLPNVENQSKKMQLKLTKCYLSNVLRNIKLERKLEENPQRQLTFTVTVNCLPHRSYKHEY
CVKPRNILEQIERSFFKLFFQSIKKLGKSTGTLLHIEEEKSTSRDDDAMLDIGEPDEPDT
KPSRSDLGELHESSDEEQAAEDADATASRSISRHRENQEYEDPEEEEMEDAAPREPEDDE
KHQIPNDTPEDEDDPDEPICIADKLITEQRKKDVANMYTYALDYDFDSEKFLWCKLKFWL
PLQMSKLDLPTILRTVAEKVVLWETPAIKRAFTFQNPEGETVLKTDGLNIVEMFKYAEIL
DLHKLYTNDIYGVSQTYGIEAANRVILKEVKDVFRMYGITVDTRHLSLIADYMTFDGTFQ
PLSRKGMEDSASPLQQMSFESSLNFLKNATLQGKQDNLMSPSSRLMLGQPCKTGTGAFNV
FLKINNTALMT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgaacggtgaatccgttcggtaaaacgggccaggctaaacatctggatccgaat
cgtcttatgttttcagtatttactgcaaacgatataaaaagtttaagtgtcctcaagatt
tgtacaccattgtccttcaacgtgttgggtcatccgctcaaaggcggtctttacgatcct
gctctaggtccgctgaatgaccattcagacccttgcgggacatgcggagaggggcctctc
tactgttcaggccattttggacacatagatttacctgtaccagtagtcaatccattgttt
cacaaagttttgtgtactttgttgaaactttcatgtctgaaatgttataccctccaaata
ccttcgtacatcaagctattgttgaatggaaaacttcgtttgatggaagaaggctttttg
aacgaagttcaaggcttggaacaggaggttcattccgccgtcgccaacatgaaccaggtc
actgaggctgaactggaattcatctcagatatcattgaaacttacatagaaacaattcgc
aaccaaaagcgctacctgcagagtaacaaaaccgaaggatctttcagtgctcgtgtttta
aacatggaatggcacagttacattgagtctgtactcaaaaactacaaggcaggcagaatg
tgcatcaattgtcacaaccccattcccagaatgactgtactcaagaacaaaattctcatc
aatcaaccagctctcaacgatgacacgatgatggcgaatcgagttattcacagattggaa
acaacatacgtaatgccagatcaatcgaagaaaaatctccgtggattatgggaacaggaa
gcagatattttaaagataatcattccgtgcctgggattagttgatctcgagtggccgacg
gacatttttttctttgaagtcataccagtactccccccgatcgttcgacctgtcaacatt
ctcaacagtcaattggttgagcatccgcagactcaagtttataaatcaattattcaagat
tgcctcgtcctccgaaacatcattcaaacaatacaagacggtgatacgcatcaacttccc
gaagaaggccgggcagtgttcgagggaataagaggagagagcgcagcggaaaaattgcat
cacgcctggacatcgttgcaatcgaacgtggaccatttgatggatcgcgagctgagtaaa
acgacggaatcggcaaattgtcagggtttgaagcaggtgatagagaagaaagagggtata
attcggatgcacatgatgggtaagagggtgaattatgcagcgcgttccgtaataacaccg
gatccaaatctgaacatcgacgagatcggtgtgccggaagcgttcgctttgaaactgaca
tatccggtgccggttacgccgtggaacgtgacggagttgcgtaaattgataatgaacgga
ccggaggttcatccgggagctgtgatgatcgagggcgaggatggattcgtgaagcatctt
cgaggcgatgataaaacgcagctggaggcgatagcgaagcgccttttgacctcaagctcg
cgaaaaacgttcaacgggataaaaatcgttcatcggcatttgcaaaacggtgatatgctg
ctgctaaatcgtcaaccgacgcttcacaaaccgagtataatggcccacaaagcacgaata
ctgaaaggcgaaaaaactctgcgtcttcattacgccaactgcaaagcttacaacgctgat
tttgacggagacgaaatgaacactcattttcctcagaacgagctggcccggagcgaaggt
tatttcatagcgaacgtctcgaatcagtatctcgtaccaaaagacggcactccgttggga
ggtttaatccaggaccacgttatttccggtgtgagattaacgctccgcggtaatttcttt
aatcgcgaggattatatgcaattagtttattcagcgattgctgacaagactggggagctc
gtactcttgcccccgtcaattctgaaacccgctcgactgtggtccggcaagcaaatcatt
tcaacggtcattctcaacttgacacctcgaggaagagcacccataaacctcgaagcgtcc
gcgaaaatcgctcccaaggattggcaggttaggaaagctcggagatggaagtgcggcgag
gagtttacggaccagcggacgatgtccgaggcggaagtcgtcatacgagggggtgagctg
ttgtccggcgtcctggacaaaactcactacggagcaactccctacggtctcatccactgt
ctcttcgagctctacggcggcacttgctccagcaaagtcctcagtgctttcggtaaactt
tttcaaacttatctgcagatttccggattcactctcggggtagaagacattttggtcgtg
cgaaaaagcgaccagaaacgccgagacatcatcgagacctgccggcagatcggggaccag
attcaatcgtcgaccctcgaacttgaccccgactcgagcgaggaacagctcaaaagtaaa
atggaagaatcgtacgccaaagatcccaagttccgagctgtcgttgacagaaaatacaaa
agtgctttggatgtcttcaccaacgacatcaacaaaacctgcctcccggctggactgctg
aaaaaatttccgcacaacaatctccagttgatggtgcaatcgggcgccaaaggttcgacc
gtcaatactatgcaaatatcttgcctcctggggcaaatagaactcgagggtaagaggcca
ccgcttatgataagcggaaaaagtctgccaagttttccggcctacgactcgagtccgcgt
tccggtggcttcatcgacgggcgtttcatgaccgggattcaaccccaagaatttttcttc
cattgcatggcaggtcgtgaaggtctgatcgataccgccgttaaaacttctcgttctggt
tacttacagcgttgtttgatcaaacatttggaaggattgacggtcaattacgactcgacg
gtgagagattccgatgggagtctcattcagatgtgctacggcgaggacggtctcgacatc
ccgaattcgaggttcctgaggaaagaagaaatggactttctcgtggataaccgtaaggcg
atcgtggatccggcgttagtggaacacttgaaggacgagacgacagaaaaaatccgtaag
ctgaacaaaaaaattcgcaaatggagagcgaaacacggcgacacctggaccaaatggcga
acgagcggattcgccaagttttctgtcctgaataacaatccagcgagctcgaaacatcga
caaatcagctcgaactgcggacgcagcaaagcggcgttgtcgttgatgaaaaagtggatc
aaggccgacgaggaagtcaagaaaaggctgaaggacgagtgcgcccggtgcccggacccg
gccagctccgtttatcgtcaggatctacagttcggcgtgctcaccgagaaaatggaggct
ctcatggaagaatatctgaacgagaaatcccggaggtttacgacttcgatcgggaaagaa
gaagtcagagatttattgtgcaccaaaatcatgaagagtctgtgtcccccgggagagccg
gtgggtctcctggccgcacaatcgatcggtgaaccctccacgcagatgaccctcaacact
ttccattttgctggtcgtggtgaaatgaacgtaactctcggaatcccccgattgagagaa
attctcatgatggcttcgaaaaacattaaaacaccgagcatggaaatccctttcaaaaaa
catttgcccaacgttgagaatcaatcgaagaaaatgcaattgaagcttaccaaatgttac
ctttctaacgtcctcaggaacattaaactcgagcgaaagttggaagagaatcctcagcgc
cagctcactttcaccgtcaccgttaattgtcttcctcacagaagttacaagcacgagtat
tgcgtcaagcctcgtaacattttggagcaaattgagaggagctttttcaaacttttcttc
cagtcgataaagaagctcggtaaatccacagggactttgctacacattgaagaagaaaaa
tccacgagtcgcgacgacgacgcgatgctcgacattggcgaacccgacgaaccagacacc
aaaccaagtcgatccgatctcggtgagctacacgaatcctccgacgaagagcaagctgcc
gaagacgctgacgccaccgcctctcgatcgatctcgagacatcgcgaaaatcaggaatac
gaagatcccgaagaagaggaaatggaagacgctgcacctcgggaacccgaggacgatgaa
aaacatcaaattcctaacgacacacccgaagacgaggacgaccctgacgaacccatctgc
atcgctgataaattaatcacggaacagagaaaaaaggacgtcgctaatatgtacacttat
gctctcgattacgatttcgatagcgagaaattcttatggtgcaaactcaaattttggctg
cctttgcagatgagcaaattggatttgccgacgatactcagaacggtggccgagaaagtt
gttctctgggaaacacccgccataaagcgtgccttcacttttcaaaatcctgaaggggaa
actgtgttgaagaccgatggattgaacattgtcgaaatgttcaaatacgctgaaattctc
gatctccacaagctctacacgaacgacatttacggtgtgtcacaaacctatggaattgaa
gctgcgaatcgagttattttaaaggaagtcaaagatgtgttcagaatgtatggaattaca
gtggacacgagacatctgtccttgattgctgattacatgacattcgacggaacctttcaa
ccactcagccgtaaaggaatggaagattcggcctcgcctttgcaacaaatgagcttcgag
tcgtctctcaatttcctcaaaaacgcgactctacaaggcaaacaggacaacttgatgtca
ccttcgagtcgtttaatgctcggtcaaccttgtaaaaccggcactggagctttcaacgtc
ttcctaaaaatcaacaataccgccttgatgacgtaa
DBGET
integrated database retrieval system
