Venturia canescens: 122413327
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Entry
122413327 CDS
T09386
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
vcan
Venturia canescens
Pathway
vcan03040
Spliceosome
vcan04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122413327
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122413327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcan03041
]
122413327
04121 Ubiquitin system [BR:
vcan04121
]
122413327
03400 DNA repair and recombination proteins [BR:
vcan03400
]
122413327
Enzymes [BR:
vcan01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122413327
Spliceosome [BR:
vcan03041
]
Complex B
Other components
Prp19 complex
122413327
Complex C
Prp19-CDC5 complex
122413327
Ubiquitin system [BR:
vcan04121
]
Ubiquitin ligases (E3)
U-box type E3
122413327
DNA repair and recombination proteins [BR:
vcan03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
122413327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Prp19
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_RIG_2nd
WD40_RFWD3
WDR90_beta-prop_4th
B-prop_COPA_B_2nd
eIF2A
Beta-prop_DCAF12
Tricorn_2nd
Beta-prop_DCAF4
Beta-prop_Nup120_160
U-box
Beta-prop_ACSF4
RMC1_N
PAS_11
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
122413327
NCBI-ProteinID:
XP_043279544
LinkDB
All DBs
Position
7:899940..903938
Genome browser
AA seq
504 aa
AA seq
DB search
MALSCAISNEVPEHPVVSPVSGSIFEKRLIEKYVSENGVDPITGTELAIKDLIDIKTTPL
VKPKPPSATSIPAILKILQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGIAQIAAIPQPAVAVEAGGLAAQPTEQAGITDDVIQKLQEKA
TVLTQERKRRGRSIPEDLLPQENIRAFQTLASHPGLHSASVPGILAIDIHGADTSKILTG
GADKSATVFNKDTEQVVAILKGHTKKVTRVIYHPDEDVVMTASPDTTIRVWNVETSQTTL
LLRAHDAPVTGLSLHPTGDYLLSSSLDHHWAFLDIRTGRLLTKVSGPGSQPLTTAQFHPD
GLIFGTGTADSQVKIWDLKEQSNVANFPGHSGPIRAISFSENGYYLATAAEDSCIKLWDL
RKLKNFKTLQLDEGYEVKDLCFDQSGTYLAVAGSDVRIYLCKQWQELKVLNEHTATATGV
RFGKHAQYIASTSMDRTLKLYGLP
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcgctctcctgtgcaatttcgaacgaagtgcccgaacatccagttgtttcgccagtc
tctggctctatttttgagaaacgccttatcgagaaatatgtttcggaaaatggtgtcgat
ccgattaccggcacagaactcgccatcaaagacctcattgacattaaaactacaccactt
gtcaagccaaaaccaccgagcgccacctcgattccagcaatactcaaaatattacaggac
gaatgggatgccgtaatgctacactcattcaccctccgacagcagctacaaactgctagg
caagaattatcacatgctctttatcagcacgatgcagcctgccgtgtaatagcgagatta
accaaagaagtcactgccgctcgcgaagctcttgccactttaaagcctcaagctggcatc
gcacagatcgctgctattcctcaaccagccgtagctgtcgaagctggcggattagctgct
caaccaaccgaacaagccggaataaccgatgatgtaattcaaaaattacaagaaaaagca
acagttctgacacaagaacgaaaacgacgcggacgatcgattcccgaagacttgttgcca
caggaaaatattcgagctttccaaactcttgcatctcatcctggtcttcattctgcaagc
gttcctggtattcttgcaattgacattcacggagctgataccagcaaaatattaactggt
ggagctgacaaaagtgcaacagttttcaacaaagacactgaacaagttgttgcgattctg
aaaggtcatacgaaaaaggtaacgagagtcatttatcatccagacgaggacgttgtgatg
accgcctctccagatactacgattcgtgtttggaacgtcgaaacgagtcaaacaacactt
ttgttgagagctcacgatgctcctgttaccggtctttcacttcatccgaccggcgattat
ttgctcagttcctcgttggatcaccattgggcgtttttggatattcgtactggaaggtta
ctcaccaaggtttctggtccaggaagtcagccattaacgacagctcaattccatcccgat
ggtttgattttcggtacgggaactgcggattcacaagtgaaaatttgggatttgaaggaa
caatcaaacgtcgcgaatttcccagggcattcaggtccgataagggccattagtttctcc
gaaaatggttattatttagccacagctgctgaagattcgtgtatcaaattgtgggattta
aggaaattgaaaaatttcaaaaccttgcaattggacgaaggttatgaggtcaaggatttg
tgctttgatcaaagcggcacgtatcttgcagtcgctggctccgatgtcaggatttatttg
tgcaaacaatggcaagaattgaaggttttgaacgaacatacggcaacggcaactggtgtt
cggtttggaaaacatgctcaatacattgcatcgaccagcatggatagaactctaaaatta
tacggtcttccttga
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integrated database retrieval system
