Venturia canescens: 122413413
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Entry
122413413 CDS
T09386
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vcan
Venturia canescens
Pathway
vcan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122413413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122413413
03041 Spliceosome [BR:
vcan03041
]
122413413
03009 Ribosome biogenesis [BR:
vcan03009
]
122413413
03016 Transfer RNA biogenesis [BR:
vcan03016
]
122413413
Enzymes [BR:
vcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122413413
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122413413
Spliceosome [BR:
vcan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122413413
Complex C
U4/U6.U5 tri-SnRNP related factors
122413413
Ribosome biogenesis [BR:
vcan03009
]
Eukaryotic type
Pre-60S particles
Helicases
122413413
Transfer RNA biogenesis [BR:
vcan03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122413413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
Death_3
nSTAND3
ATPase_2
DUF3846
Motif
Other DBs
NCBI-GeneID:
122413413
NCBI-ProteinID:
XP_043279670
LinkDB
All DBs
Position
7:complement(2865073..2872781)
Genome browser
AA seq
1023 aa
AA seq
DB search
MTDFVQDLFDVFEETNENVVEIIPMPVTDDGTKQISNHLVEIKPEKGANPNREPDRDDED
FDCKRMKVENILQDINLDELASRIKIHTIETIESCTHEVAVPPDHEYVPLETKTTKPAKE
YKFILDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALS
NQKYREFYEEFKDVGLITGDVTINPTASILIMTTEILRNMLYRGSEVMREVGWVIFDEIH
YMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVAHLHHQPCHVVYTDYRPTP
LQHYIFPAGGDGIHLVVNEEGQFKEDNFNRAMACLQGEGAKGDQKGRKGGVRGGGAAQSN
IFKMVKMIMERNFAPVIIFSFSKKDCELYAMQLSQLDLNTIQEKQLVDEVFNNAMDVLSD
DDRKLPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPA
RTVLFTTVRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVIMMIDEQVNPAVGKDIVQ
GKPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPELYNRVKELEAAYN
EVEVDKIDSISSYHDIREQLERLGTDFRIYLTKPEYLLPFLQPGRMVKIQNEKADFDWGI
IVNFKKKTPRNPEKEKTVIVIDVLLHISKMSKENAPMPCAPNEEGEIEVVPVLSTLVTQI
SSLRLYYPKDLRPADNRKSVLKTIQEVKRRFPDGPPLLNPITDMRIEDSSFKKIVKKIEM
LEEKLYAHPLHKNPKLNELYDKFMKREELGENLKNAKDELKRAKSVLQMDELKSRKRVLR
RMAYCTAADVIELKGRVACELNGADELLLTEMIFNGLFNALSVPQMAALLSCFVCDEKSN
EMPKATNELSGPLRQMQDLARRIAKVSTEANLELDESAYVERFKPFLMDVVYAWCKGASF
LQICKMTDIFEGSIIRTMRRLEEILRQLSQAAKNIGNTDLENKFSDAIKLLKRDIVFAAS
LYL
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgactgattttgttcaagatttgtttgacgttttcgaggaaactaacgaaaatgtcgtg
gaaatcattccgatgccagttaccgacgatggaactaaacaaattagcaatcatctcgtt
gaaataaaacctgagaaaggggctaatccgaatcgtgaacctgatcgtgatgatgaggac
tttgactgcaaacggatgaaggtggaaaatattctacaagacatcaatttagatgaattg
gcgtcacgaataaaaatacacacgatagagactatcgagtcctgcacacacgaagtagct
gttccacctgaccatgaatatgtaccattggaaaccaaaaccaccaagccagctaaggag
tataaatttattctggatccgttccagaaagaagcaatcctgtgtatcgaaaataatcaa
tcagttctcgtgtccgctcacacgtcggcaggaaaaacagttgtcgctgaatacgctatt
gcctgctccttgagagacaaacaacgagttatttatacaacacccataaaagctctgagt
aatcagaaatacagagaattttatgaagagtttaaagatgttggtttgataactggagac
gtcacgatcaatccaaccgcgagtattctcataatgaccacagaaattctgagaaacatg
ttgtatcgaggatccgaggtcatgagagaagtcggttgggtaatattcgatgaaattcat
tacatgagagacaaggaaagaggagtcgtgtgggaggaaacgttgatacttttgcctgat
aacgttcactacgtttttctatctgccacaattccaaatgcaagacaatttgccgaatgg
gttgctcatctccaccatcaaccttgtcacgtcgtttatacagattacagaccaactccc
ctgcagcattacatttttccagccggaggagacggcatccatttggtcgtgaatgaagag
ggtcaattcaaagaggacaatttcaacagagcgatggcgtgtcttcagggcgagggagca
aagggtgaccagaaaggtcgtaagggtggagttcgtggtggaggtgcggcacaatccaat
attttcaagatggttaaaatgataatggagcgtaatttcgcgccagtgataatattcagt
ttttcaaagaaagactgtgagctttacgctatgcagctgtcgcaactggacctcaacacg
atacaagagaaacaattagtggacgaagttttcaacaatgcgatggacgtgctgagcgac
gacgacagaaaattgccgcaggttgaaaatgtgttaccacttttgagacgaggcataggc
atccatcacggtggattgctgccaatattaaaggaaaccgtggagattcttttcggcgaa
ggtttaataaaagctcttttcgccaccgaaactttcgccatgggtttgaacatgccagcg
agaacggttttgttcacgactgtgcgtaaattcgatggtaaagatttccgatggatcacg
tccggcgaatacatacaaatgtccggccgtgctggacggcgaggtctcgacgaaaaagga
atcgttatcatgatgatcgatgaacaagttaatccagccgttggcaaagacatcgttcag
ggtaaaccggatcctataaattccgctttccatctaacctacaacatggttctgaatctt
cttcgagtcgaagagattaatccggaatatatgctcgaaagaagtttctaccaatttcag
aatcaagcgagcattccggaattatacaacagagtgaaagagctcgaagcagcgtacaac
gaggtcgaggtcgacaaaatcgactcaatctcttcgtatcacgacattagagaacagctg
gaacgtctgggtaccgacttccgtatatatctcacgaaaccggagtaccttctaccgttt
ttgcaacctggcagaatggttaaaatacaaaatgaaaaagccgacttcgactggggcata
atagttaatttcaaaaagaaaacaccgaggaatccggaaaaagaaaaaactgtaatcgtg
atcgatgtgctgttgcacatttcaaagatgtcaaaagaaaatgctccgatgccttgtgcc
ccgaatgaagagggagaaatcgaggtcgttccagtgttaagtactctcgtaacgcaaata
agctctttacgactctattacccgaaagatcttcgaccagctgacaacaggaagagcgta
ttgaaaacaatccaagaagtcaagagacgcttcccggacggtccaccgttgttgaatcct
ataactgacatgagaatcgaagattccagtttcaaaaagattgtcaagaaaatcgaaatg
ctcgaggagaaattgtacgctcatccgttgcacaaaaatccaaaactcaacgagctctac
gacaagtttatgaaacgcgaggagctcggggaaaatttgaagaatgctaaggacgagctc
aaacgtgccaaatcggtgttgcaaatggatgagcttaaatctcgcaaaagagttctccgg
agaatggcttattgtaccgctgccgatgtgattgagctcaagggtcgcgttgcttgtgaa
ttgaacggcgccgatgagctccttctcacggaaatgatattcaatggacttttcaatgcc
ctcagcgttccacaaatggcagcactactcagctgcttcgtttgcgacgagaaatccaac
gaaatgcccaaagccaccaacgagttgagcggacctcttcggcaaatgcaagatttagcc
cgaagaatagccaaagtttcaaccgaagcgaatctcgaacttgacgaaagcgcttacgtc
gaaagattcaaaccattccttatggacgtcgtttatgcctggtgcaagggcgcaagtttc
ttacaaatctgtaaaatgaccgacattttcgaaggctccatcatacggacgatgcgacgc
ctcgaagaaatcctcagacaacttagccaagcggctaaaaacatcggcaacaccgatctt
gaaaataaattcagtgacgccattaaattactaaagcgcgacattgttttcgcagcatct
ctttatttgtaa
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