Venturia canescens: 122413659
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Entry
122413659 CDS
T09386
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
vcan
Venturia canescens
Pathway
vcan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122413659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcan03400
]
122413659
DNA repair and recombination proteins [BR:
vcan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122413659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
122413659
NCBI-ProteinID:
XP_043280095
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All DBs
Position
7:complement(1072499..1085581)
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AA seq
925 aa
AA seq
DB search
MSNETKSQTGQLLGMGLAAQQSFVRFFKGLPEKPSTTIRFFNRIEYYTVHGSDALFASEE
VFKTTSACKMIGGEPNKIEGLILNFARFQSLVRDLLLVKQYRVEVYVNQGTASNQNWVLE
FKGSPGNLTQFEEILFGDTDVAVGGSIMALKLGMEGKSRLVGVSIVDTVATLISVCEFLD
DETFSDLEALVVTNGPKECLVIQGDGSAEFQTIKQIMERSNVMITQRKKNEFSSDSIFQD
LNSLIKFGKGQQENAQALPETNLKSAMSATAALIKYLDLTSDDGNMNQYSLKQLEQSRFI
RLDAAAIKALNIEERTDSLPALVGDGPRSILGILNKCRTPQGRRLIAQWVRQPLKDLSLI
KERHDIVEQLVNDSNLRSCLSDDHLQRIPDLQQLAKKLSRKKAGLQDCYKIYLCVSNLPV
LLEILSSSSPTPVMRAMFVEPLTELISDMDKYQQMVEQTIDIEAAQKNDFMVRADFDTNL
QDLKETIDELEEKMQGQISKVANDLDMEAGKTLKFESNQQYGYFFRITLKEEKILRNRKN
YTIIDSNKSGVRFRNSKLTEINEEYLDARNKYMSQQKAVVSEIIEIAAGYSAPVKSIGSL
IGNLDVLTAFAVAAVGATKQYVRPEMLPSENGEFNLVQARHPCLEAQNFRYKANDVAMKR
DESHFYIITGPNMGGKSTYIRSAGVCALMAHIGSFVPCDSAKISLLDCILARVGADDSQT
KGLSTFMTEMVEAAAILRMATKNSLVIIDELGRGTSTYEGCGIAWSIAEYLAKEVKAYCL
FATHFHEITRLAEDVPAVKNRHVTANVTDDKLTLLYSVKPGICDQSFGIHVAKMAKFPES
VVEFAKRKQAELEDHQNVVFEGSEVPEKKRKTIKEGEELITNFANKCKSLDKSLSESALK
TEIQKLKDQILTHNNPYIKALLGVS
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgaaacgaaaagtcaaacaggccaattgcttggaatgggtctagcagcccaa
caaagtttcgtcagatttttcaagggacttccagagaaaccgagtacgaccatacgattt
ttcaaccgcatcgaatattacaccgtacatggtagcgatgccctattcgcctctgaggaa
gttttcaaaactacttcagcatgcaaaatgattggaggagaaccgaacaaaatcgaagga
ttgatcttgaatttcgcaagatttcaaagtctcgttcgggatttgctgctggttaaacaa
tatcgtgtggaggtgtacgttaatcaaggaacagcctcgaatcaaaattgggttttggag
ttcaaaggttcaccaggcaatttgacgcaattcgaggaaatacttttcggagatacggat
gtcgctgtcggcggttcaataatggcgttgaaacttggcatggagggaaaaagcagactc
gttggtgtcagtatcgtcgatacagtcgcgactctaatttccgtctgtgagtttctcgac
gatgaaactttttccgatttagaagctttggttgtgaccaatggacctaaagagtgtttg
gtaatccaaggcgatggaagtgccgaatttcaaaccatcaaacaaattatggaacgaagc
aacgtgatgataacgcaaagaaagaagaacgaattttcctcggattcgatctttcaagat
ttgaactctttaattaaatttggaaaaggtcaacaagagaacgcacaagccttgccggaa
accaatctcaaatcggccatgtccgcgacagcagctcttattaaatatttggatttaaca
tcagacgatggaaacatgaatcaatatagtctgaagcaactggaacaatcacgattcatc
cgtctcgacgccgcagcgataaaagctctgaatatcgaagaacgaaccgattcattgcct
gccctcgtcggagacggcccgagaagcattctcggaatcctgaacaaatgtcgaacaccc
caaggacgtcggctgatcgctcagtgggtcagacaacctctcaaagatttatccctcata
aaagagcgtcatgatatcgtggaacaattggtcaatgattccaatttacgatcatgttta
agcgatgatcatcttcaacgaataccagatttacaacaattggcgaaaaaattgagcagg
aaaaaggctggtctccaagattgttacaaaatttatttgtgcgtctcgaacctgcctgtt
ttactggagattttatcgtccagttccccaacgccagtaatgagggccatgtttgttgag
ccattaacggagttgatcagtgacatggataaatatcaacaaatggtcgagcaaacaatc
gacatcgaagcagcgcaaaaaaatgattttatggtccgtgcagatttcgacacaaacttg
caagatttgaaagaaacgattgacgaactcgaagaaaagatgcagggtcaaatatccaag
gttgccaatgatcttgatatggaagctggcaaaactttgaaattcgagtcgaatcaacag
tacggttatttcttccgtattacattgaaggaagaaaaaatattacggaatagaaaaaat
tacacgatcatagattcaaacaaaagtggtgtgagattccgaaattcaaaactcaccgaa
atcaacgaggaatatctcgatgccaggaacaaatatatgtcccaacaaaaggctgtcgtc
tcggaaatcatcgagattgcagccggttacagcgctccagtgaaatcaatcggctcgcta
atagggaatttggatgttctcactgcgttcgctgttgcagcggttggcgccacgaaacag
tacgtacgtccggaaatgttaccgagcgaaaatggtgaattcaatcttgtacaggctcga
cacccttgtctcgaggctcaaaattttcgttataaggcgaacgatgttgctatgaagaga
gatgagtcccacttttatatcatcaccggaccgaacatgggtggcaaaagtacttatatc
agatccgccggtgtttgtgctttgatggcacatattggaagttttgttccttgtgactcg
gctaaaatttctttactggattgtattttggccagagttggtgctgatgattctcagacg
aagggactgtcaactttcatgactgaaatggtcgaggctgccgctattctacgaatggct
accaagaattctctggtgatcattgatgaactcggtagaggaacttccacgtacgagggc
tgtggaatcgcctggtcgatcgcagaatatttggcaaaagaggtgaaagcatattgtctg
tttgccacacattttcatgaaataacgcgccttgccgaagacgttccagctgtaaaaaat
cggcatgtaacagcaaacgtaaccgatgacaaactgacacttctttattccgtgaaaccg
ggaatttgcgatcagagtttcgggattcacgtcgcgaaaatggctaagtttccagaatcc
gtagtcgagtttgccaaacgcaagcaagctgaattggaagatcatcagaatgtagttttt
gaaggctcggaagtgccagagaaaaagagaaaaacgattaaggaaggtgaagaactgata
accaactttgccaataaatgcaaatctctcgacaaaagtttgtcagaatcggcgctcaaa
acagagattcaaaaattgaaggatcagattttgactcacaacaatccgtacataaaagcg
ttacttggagtgtcataa
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