Venturia canescens: 122415033
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Entry
122415033 CDS
T09386
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vcan
Venturia canescens
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vcan03016
]
122415033
Enzymes [BR:
vcan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122415033
Transfer RNA biogenesis [BR:
vcan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122415033
Prokaryotic type
tRNA splicing ligases
122415033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
122415033
NCBI-ProteinID:
XP_043282741
LinkDB
All DBs
Position
8:13891310..13894222
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AA seq
506 aa
AA seq
DB search
MVVRQYDEELKYLEKINDHCWRIKKGFQPNMKVEGVFYVNKTLERLMLEELRNSCRPGQV
GGFLPGVKQIANVAALPGIVGRSVGLPDIHSGYGFAIGNMAAFDMNDPQSIVSPGGVGFD
INCGVRLLRTNLFEKDVAPVKEQIAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KFAASKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFHMTPDDLDMHVIYDVSHNIAKVE
EHMVDGKPKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTAQGM
QETFGSTCHGAGRALSRAKSRRNLDYQQVLNKLDQLGIAIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtccgacagtatgacgaagagctcaagtatctcgaaaagataaatgatcactgt
tggcgcataaaaaagggttttcagcccaacatgaaggttgaaggtgtattctatgtcaat
aaaacattggaacgtttgatgcttgaagagttgagaaattcctgtcggccagggcaggta
ggaggctttttacctggggtcaaacaaatcgccaatgttgcagcactccctggtatcgta
ggcagatctgtaggattaccggatattcactcaggctacggattcgcaataggaaacatg
gctgcttttgatatgaacgatccgcagtcaatcgtttctccaggtggtgtgggatttgac
ataaattgtggcgttcgtcttctccgaacaaatctgtttgaaaaggacgttgctcctgtg
aaggaacaaattgctcaaagtttattcgatcatataccagtaggagtaggatccaaagga
attattccaatgaatgcaagagatctggaagaggcccttgaaatgggaatggattggtct
ttgagagagggctatatttgggcagaagacaaagaacactgcgaggagtatggaagaatg
ttgaatgcagatccatcgaaagtttccatgagagcgaaaaaacgtggccttccccagttg
ggaactttgggtgctggcaatcattacgccgagattcaagtcgtggacgaaatatacgac
aaatttgctgcctcgaagatgggaatcgaagagaaaggtcaagtttgcgtgatgatacac
tcaggaagtcgaggattcggtcatcaagtagcaactgacgctcttgtgcaaatggagaag
gccatgaaacgtgacaatattgagacaaacgatagacagttggcgtgtgctcatataaaa
tcacaagagggtcaggattacttgaagtcaatggcagctgctgcgaattttgcttgggtc
aatagaagttccatgacatttctcagtcggcaggccttcgccaaacaatttcacatgaca
cctgacgatttggacatgcatgtgatttacgatgtttctcacaatattgccaaagtcgag
gagcatatggtggacggaaaaccaaagactttgttggttcacagaaagggttcgacccga
gcatttccaccgcatcatccccttataccagtggattatcagctgactggacagccagtt
ctcataggtggtacgatgggaacgtgcagttacgttctcaccggaacagctcaaggaatg
caagaaacttttggatcgacatgtcacggagctggccgtgctttgtcgagggcgaaatct
cgtcgaaatttggactatcagcaggttctaaacaagctcgatcagcttggaatagcgatc
agagttgcatcaccaaaactagtgatggaggaagcacccgaatcatacaagaacgtaact
gacgtcgttgatacttgtcacgctgctggtatttcaaaaaaatgtatcaaactcagacca
attgcggttattaaaggctga
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