Venturia canescens: 122415087
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Entry
122415087 CDS
T09386
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
vcan
Venturia canescens
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vcan04147
]
122415087
00535 Proteoglycans [BR:
vcan00535
]
122415087
00536 Glycosaminoglycan binding proteins [BR:
vcan00536
]
122415087
Exosome [BR:
vcan04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122415087
Proteoglycans [BR:
vcan00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122415087
Glycosaminoglycan binding proteins [BR:
vcan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122415087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
PurA
Motif
Other DBs
NCBI-GeneID:
122415087
NCBI-ProteinID:
XP_043282853
LinkDB
All DBs
Position
8:complement(20111594..20135862)
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AA seq
1175 aa
AA seq
DB search
MRLNFRIAFLICWTILPSATLVRGDFFGEKKEIVHDLLQAAMATAENKNQYFDDGLDGFP
VFGFRPGSEVKQPYRLYLPEKLPAEFDLVATFKPMSVRTSYLFAVLNPFETVVQLGIRIS
DGPASNQNISLVYTNSDEHTHSEEIAKFTVPKLSKKWSKIVMRVSTNEVILYLNCHEMAR
HKVTRIPQELVFDTASTLYIAQAGPHIQEKYDGLVQSLKLYPGHPQDLVRCTTDFEFFPI
EFGSGDETTTLDAASGYIDFDQFGQEDNDELDKDDDANPPPLITPPPPNTVAKGPKGDKG
DKGESVRGPPGPPGPPGPPGSTVYDPVEPHRNGNGEEPIRVGPKGEPGACSCNATDLLAS
FTMPKMIQGPKGEPGLPGKEGKQGQMGLTGAAGAPGERGGPGPPGEKGDQGKVGSPGLEG
AQGQKGAPGRDGIPGEKGAQGPPGPPGKGEFSVHDPSWTPRGISRDGITMRPGLPGQKGE
PGTSGSVGSKGEPGIPGDKGQKGELGGKGSKGDHGKDGPRGNQGFKGEPGVPGIAGIAGS
PGENGRPAEKGSKGDAGPEGKPGPAGPPGPPGPGGGDANFSPDAGAFRKGIFGAKGDKGD
LGYKGDVGPKGEKGERGEFGNPGVPGINGVQGPLGNKGEPGRDGIPGDKGHKGDRGERGP
AGETVFAGSGDYIAIKGEKGTEGKRGRRGRPGQTGPMGPPGIDGKPGPPGWKGPQGIPGI
PGTLGPIGLKGEKGEPCDTSSMGSGLGIKGEKGSDGFPGIPGPPGRDGQRGPPGPPGPPG
LPSQGNYVPVPGPPGPPGNPGSPGISLIQPGDPGIGRSRIFEDRDYYASRQGARISELKA
LQELKQLKELKEHLGSGGGASGVSGSRAITEASTRIVPGAVTFQNTEAMTKMSSVSPVGT
LAYIIDEEALLVRVNNGWQYIALGSLLPITTPTPPTTVRPAPNPPFEASNLINQIPMKAE
GTGWYPKMLRMAALNEPSTGDTHGVRGADYACYRQAQRAGLRGTFRAFLSSRVQNVDSIV
RLSDRDLPIVNIKGDVLFNSWKDMFDGSGAYFSQNPRIYSFNGKNILTDFGWPDKIVWHG
SHKLGDRAMDTYCDAWHSGGSDRYGLASPLTGGRLLEQVRYSCDKKFALLCIEVTSETSR
KRRSLSEQEEEEEMDESRELTEDDYVRHLDKLMAH
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgcgactcaatttcagaatagcgtttctaatctgctggacgatcctgccgagcgcgacg
ctcgttcgaggggatttcttcggcgagaaaaaggaaatagtgcacgatctcctacaagct
gcgatggccaccgctgaaaacaagaaccagtatttcgacgatggtctcgatggctttccc
gtgtttggattccggccaggttccgaagtcaagcagccgtatcgtctatatctgccggaa
aaattgccagcggaatttgatctcgtcgctacatttaaaccgatgtcagtgagaacgagt
taccttttcgccgttttgaaccccttcgagacggttgttcagctgggcatacggatttcc
gatggaccggcttcgaaccaaaacatatcgctcgtctacacgaactcggacgagcacact
cactccgaagaaatcgccaaattcacggtgccaaagttgtcaaaaaagtggtcgaaaata
gtgatgagggtctcgacgaacgaggttatactttacttaaattgccatgagatggcgaga
cacaaagtaacgaggataccgcaggagctggtcttcgacacggccagtaccctctacatt
gctcaggctggtccacacatacaggaaaagtacgacggtctcgttcaatcgttgaaactc
tatccgggacatccgcaggatcttgtcagatgcacgaccgatttcgagttcttcccaata
gagtttggctcgggtgacgagaccacgacactcgacgctgcttcaggatacattgacttt
gaccagttcggccaagaggataacgacgaattggataaggacgacgatgctaatccaccc
ccgctcatcacaccaccgcctccgaataccgtcgcgaaaggaccgaaaggcgataaagga
gataagggggaaagtgttcgcggaccaccgggaccacctggaccaccgggaccaccgggt
tcaaccgtgtacgatccggtcgaacctcatcggaacggaaatggcgaggaaccaattaga
gttggcccgaagggggagcctggagcatgctcgtgcaacgcgactgatctactggcgagt
ttcacaatgccgaaaatgattcaagggccgaagggagagccgggcttgccagggaaagag
ggcaagcagggccagatgggattgacgggagcggctggagcacctggcgaacgcggggga
ccgggacctccaggggaaaaaggcgatcaaggcaaagtcggctcgccgggactcgaaggc
gctcaaggtcagaaaggcgctccaggaagggacgggattcccggtgaaaaaggcgcccaa
ggaccgcccggacctcctggcaaaggcgaattttctgttcacgatccgagttggacgccg
cggggtatttcgagggatggaattacaatgaggccaggattaccggggcagaagggagag
cccggaacgagcgggagcgtgggctcaaagggtgagccgggaattccaggtgataaaggt
caaaagggtgagttgggtgggaaaggatcaaagggcgatcacggcaaggacggtccgcgt
ggaaatcagggcttcaagggcgagcctggagttccgggaattgcgggaatcgcgggctcg
cccggggaaaatggccggccggctgaaaagggttccaagggtgacgccggcccggagggg
aaaccgggaccagcggggcctccgggacccccgggtccgggaggcggcgacgctaatttt
tccccggatgctggagccttccgcaaaggcatcttcggagcgaagggcgacaagggcgac
ctcggttacaagggcgacgtgggcccgaagggcgaaaaaggcgagagaggcgaattcggc
aacccgggcgtccctggcataaacggcgttcaaggtcccctcgggaacaaaggcgaacca
ggcagagacgggatcccgggagacaagggtcacaagggagaccgaggcgaacggggccct
gcgggcgaaaccgttttcgctggatccggcgattacatcgctatcaagggcgagaaggga
accgagggcaagaggggcagacgcggacgtcccggacaaaccggaccgatgggaccacct
ggcatcgatggaaagcctggaccacccggctggaagggtccccaaggaatccctggtata
cccggaactctggggcccataggattgaagggtgaaaagggcgagccttgtgacacaagc
tcgatgggctcaggtttggggattaaaggagaaaaaggttcggacggtttccctgggatt
ccgggaccacccggtagggacggacagcgaggacctcccggtcctccgggaccgccgggt
ttaccgtctcaaggtaattacgtaccggttccggggccacccggacctcccggtaatccc
ggctcccctggaatctcgctcattcaacctggcgatccgggaatcgggagaagtcgcata
ttcgaagatcgagattattacgcctcgagacagggagcaagaataagtgaactcaaagca
cttcaagaattgaaacaattgaaagagttgaaggaacatttggggagtggtggaggagct
tctggggtctcaggctccagggctattacagaggcttcaacgcgaattgtacccggtgct
gttactttccagaacactgaagcgatgaccaaaatgtcaagcgtcagtccggttggtacg
ctcgcttatatcatagacgaggaagctttgctcgttcgagtcaacaatggatggcaatat
atcgcgcttggatcacttttgcccataacgacaccaacaccaccgacgacagttcggcca
gccccgaaccctcccttcgaggcttcgaatttgatcaatcagataccgatgaaggctgaa
ggcacagggtggtatccgaagatgctgagaatggctgctctgaacgaaccatcgactgga
gatactcacggtgtacgaggagcggactacgcctgttatcgacaagcccagcgggccggt
cttcgaggaactttcagagcttttctgagttcgagagttcaaaacgtcgatagtatagtt
cgcctcagtgacagagatctgccaatagtcaacatcaagggtgacgttctcttcaactct
tggaaagatatgttcgatggcagcggtgcttatttttcccaaaatccaaggatctacagt
ttcaatgggaaaaatatcctcacggatttcggatggcctgacaaaatagtatggcacggt
tcgcacaagttgggagaccgtgcaatggacacgtactgtgatgcctggcacagtggtggt
tccgatcgttacggtctagcctcgccgttgacgggtggtcgacttctcgagcaagttcgt
tattcgtgcgacaagaaatttgctttgttgtgtatcgaagtgacgagcgagacgtcccga
aagcgtagaagtttgtcggagcaggaggaggaggaggagatggacgaaagtcgtgaattg
acggaggacgattacgtgagacatctcgacaaattaatggcacactga
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integrated database retrieval system
