Venturia canescens: 122415404
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Entry
122415404 CDS
T09386
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
vcan
Venturia canescens
Pathway
vcan03013
Nucleocytoplasmic transport
vcan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122415404
03015 mRNA surveillance pathway
122415404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122415404
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122415404
mRNA cycle factors
P-body specific factors
122415404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
122415404
NCBI-ProteinID:
XP_043283449
LinkDB
All DBs
Position
8:complement(11291913..11296048)
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AA seq
1157 aa
AA seq
DB search
MTEGEMAVEGEGEAGECAEVPSEEDRQYLLDYIKETEQRLAAKEEIRLSNLNVTRPPDSH
FSKLDSNLKKNTTLVKKLKNFSATQLDVFLKDMANLNLTKYVSEIAIALVDAKLKMTDVN
PAVRACSFMHQNYAEFSSHFFENWQRALSLKVGEKIANPSKLRVDLRFYAELVNAGIFTH
KQGLSLLGSVLTVLINMDKEEHNNASIILSFCRHCGEDYAGLVPRRVRELSEKLQIPVPR
SKLLSPDKQQNVRTLLRDYYNSLCKHLLKEHKELQAFEKQNRKILQTRGELSTERKEKLE
SLQLSYERLVTSVQNFADTLDEKMPELPVDAEVRAEAEESLKMISEGEDNSILEDMWGDE
ETRRFYEVMPDLMVFMPGSYPKESNVLKNEPCATPLITEETLDEEIVFDDLEEIEKVTEE
AEPEYEEPQVANISNKIMLDAFLTHLPNCVNREMIDNAAVDFLMNLNTKHNKKKLIKALF
GVSRIRLDLLPFYSRLAAILYPVMPDVGNDLCSMLKHDFKYHVRKKDQINIESKVKVVRY
IGELVKFKLYSKIEALYCLKVLLHDFTHHHIEMTCNLLEICGRYLFCSPDSHQRTKVYLE
QMMRKKAVTALDSRYVTIIENAYYFVNPPESTVGMSKKIRPPIHEFIRKLLYQDLSKTNT
DKVLKWMRKLDWDDDATASYAIKCLTAAYNVKYLNIRCVGSLLAGLVAHYEFVGPYVVDG
VLEDIRLCMEMNLPKYNQRRVAMVKYLGELYNYRMVESGDIFRTLYLLITFGVSTDHAVP
SPLDPPEHLFRIRLVCTLLETCGQYFSGGSSKKKLDYFLIFFQNYYLFKYTDPTWTSENP
FPIGIDYMYRDTLAMLRPKMQIFQSYKESQCAIEELRANLYPSLVNMSEDGAADQDMEMG
VIPEVEEESGSVVGGAGGNGGGDAKAVGDLHFEEAEDLSEAQSDEDWFGDRDENQGTQDN
TQGDQSLSQGCNEATGVVMDASELDAALPSGPKRVNCPEDDDFLSAFDKIVSDNIQDRMR
DSVKPQQVDISVPLHVKSTKKTYEQLHEVPADTKTVDFVLMLRKGNKQQYKNLAVPVSSE
LALNLRNREQEQKEEKERVKRLTLNITERQEEEDYQETINQGTRPVTVNLNRERRQKYNH
PKGAPDADLIFGPKKIR
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaggtgagatggctgtcgagggcgaaggagaagctggtgaatgcgcggaagta
ccatcggaggaagaccgtcagtatttgttggattacatcaaagaaacggaacagagattg
gcggcaaaggaagagattcgtttgtcgaatctgaacgtgacgcgaccaccggattcacat
ttcagtaagctggattcgaatttgaaaaaaaatacaacattggtcaagaaattgaaaaac
tttagcgcgacgcaactggatgttttcctgaaagacatggcaaatctgaatttaacaaag
tacgtaagtgaaatagccattgcgttggtggatgcgaagctcaaaatgacagatgtcaat
ccagcagtgcgagcttgtagtttcatgcaccaaaactacgcagagttctcaagtcacttt
tttgaaaactggcagagagctttgagtctcaaggttggtgagaaaattgccaatccaagt
aaactcagagtagatttaaggttttacgcagagcttgttaacgctggtatatttacgcac
aagcaaggtctctctttgctgggttcggtgctcactgttttgatcaacatggacaaagag
gagcacaataatgcgagtataatcctcagcttttgtcgccactgtggagaagattatgca
ggtttggttccaagacgagtgcgagagctgtcagaaaagctgcagattccagtgccacgg
agcaagctcttgtctccggacaaacaacaaaacgttcgtactttgttgcgtgattattac
aattcgttgtgcaaacatttgttgaaagagcacaaagagttgcaagcttttgagaagcaa
aatcgcaaaatattgcaaactcgaggagaactcagtaccgaaaggaaagagaagctcgaa
tctctgcaattatcctatgaaagattggttaccagtgtccagaatttcgctgataccctg
gatgagaaaatgcccgaattgcctgtggatgcggaggtaagagcagaagcggaggagagt
ttgaagatgataagcgagggtgaggacaacagtatattggaagacatgtggggggacgaa
gaaactcgaaggttctacgaagtgatgcccgatttgatggtgttcatgcctggttcctac
ccaaaagaatcaaatgttcttaaaaacgagccctgcgcaactcccctcatcacagaagag
accctcgacgaagaaatagtttttgacgatttggaagaaattgaaaaagtaacagaagaa
gcagagcccgagtacgaggaacctcaagtggccaatatcagcaataaaataatgctcgat
gcgtttttgacacatttaccaaactgcgttaatcgcgagatgatcgacaacgcggcggtc
gattttctcatgaatctcaataccaagcacaacaagaaaaaactgataaaagctctgttc
ggcgtgtccagaatacgcctcgatctactcccattttattcgcgtttggcagcaattctt
tatccagtaatgccggatgtgggtaatgatctgtgttcaatgctcaaacacgacttcaag
tatcacgtgcggaaaaaggaccagatcaatatcgagtctaaggtcaaagtcgtccgttat
atcggggaactggtaaaattcaagctctactcaaaaatcgaagcgttgtattgtctgaaa
gtattgctccatgattttactcaccatcacatagaaatgacgtgcaatttattagaaata
tgcggtagatatttgttttgttcaccagattctcatcaacgaacgaaagtttacctggaa
caaatgatgcgaaaaaaggcggtaacggcattggattcccgttacgtgacgataatcgag
aacgcttattattttgtaaatccaccagaatcgacggtgggaatgtcgaaaaaaataaga
ccaccgatccacgagttcataagaaaattactttatcaagatttgtcgaaaacgaacacc
gacaaagttttgaaatggatgagaaaattggattgggatgacgatgcaactgcgagttac
gcgatcaagtgtttgacagcggcttacaacgtcaaatacttgaatattcgctgtgtcgga
agtttactggctggattggtcgctcattacgaattcgttggaccttacgtcgtcgatgga
gttctcgaagacattagactctgcatggagatgaatctgccaaagtacaatcaacgcaga
gtcgcgatggtcaaatacctcggcgagttgtataattatcgtatggtcgaaagtggcgat
atatttcgaacgctttacctccttataacgttcggcgtcagcaccgatcacgcagttcca
agtcccttggacccaccagagcacctcttccgcataagactcgtgtgcacacttctggaa
acttgtggacagtatttcagcggcggttcgagcaagaaaaagctcgattacttcctcata
tttttccaaaattactatcttttcaagtacaccgatcctacttggacgagcgagaatccc
ttcccgataggaatcgattatatgtacagagacacattggcgatgttgagaccaaagatg
caaattttccagagctacaaggagtctcagtgtgccattgaagaattgcgagcaaatttg
tatcccagtttggtgaacatgagcgaggatggagcagctgatcaggatatggaaatggga
gtcataccagaagttgaagaggagtctgggagcgtggttggaggagctgggggtaacggg
ggtggcgatgcgaaagctgtgggagatttgcattttgaggaagcagaggatttgtcggag
gctcaatcggacgaggattggttcggggaccgtgacgagaatcagggcacgcaggacaac
acccagggtgaccaaagtctttcccaaggttgcaacgaggcaacgggagttgtaatggac
gcttcggagctggatgcggctttgccatcgggccctaaaagggtcaactgtcccgaggac
gacgattttctttcggcttttgataaaattgtatccgacaatattcaggaccgtatgaga
gattctgtgaagccgcaacaggtcgacatcagtgtgcctctccacgtgaaaagcacgaaa
aaaacatacgagcagttgcacgaagtgccagcagacacgaaaaccgtagattttgttctc
atgctcagaaaaggcaacaagcaacagtacaaaaatctcgcggttcccgtctcctccgaa
ctcgctcttaatcttcgcaatcgggagcaagaacaaaaagaagaaaaggaaagagtgaaa
agactcactttgaatataactgagagacaagaagaggaagactatcaggaaactatcaac
caaggcacgcgaccagttaccgttaacttgaacagagaacgaagacaaaagtacaaccat
ccgaaaggtgcgcctgacgctgatctcatttttggccccaaaaaaatacgatga
DBGET
integrated database retrieval system
