Venturia canescens: 122416702
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Entry
122416702 CDS
T09386
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
vcan
Venturia canescens
Pathway
vcan03022
Basal transcription factors
vcan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122416702
09124 Replication and repair
03420 Nucleotide excision repair
122416702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcan03021
]
122416702
03400 DNA repair and recombination proteins [BR:
vcan03400
]
122416702
Transcription machinery [BR:
vcan03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122416702
DNA repair and recombination proteins [BR:
vcan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122416702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Voldacs
PH_SLA1
Motif
Other DBs
NCBI-GeneID:
122416702
NCBI-ProteinID:
XP_043285666
LinkDB
All DBs
Position
1:complement(9613462..9618127)
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AA seq
595 aa
AA seq
DB search
MKFQRPRNIEILLQYLKLFLSSRYISSHPTSTMTTSSEDVLMQVGQVRYKKGDGTLYVMN
ERIAWMLDNRDTVSVSHKYADIKLQKISPDGKSKIQLQLVLHDGTSSTFHFVNKNGQEAQ
VKDRDDVKELLQQLLPKFKRKVNKELEEKNKLLLENPTLLQLYRDLVITQVITSEEFWSQ
HAAAYTQAKNSQRQEIGVNSAFLADIKPQTDGCNGLKYNLTPDIMECIFKTYPAVKRKHQ
ENVPHKMSESDFWTKFFQSHYFHRDRINAGTKDLFTECAKIDDQELKRDIQTGINDPLLD
ITSFEDVVVDDNLCTESGSTDKKSDHNIHQSMIKRFNQHSIMVLKASTAKRQETKTSPPQ
LNGSASCANKNPSPITNRTDDQPKNKKLRIQEKLVYDDLDGSSETKTNVSAPLNLTHVDR
YLHGPVPGTIATELTSEEMQSTLMHLKRESVNWINGNNLPRQPSSSLVSSSAAVSALGEL
TPGGALMKGFREDNVGQLIPKDLEKELRNVYVCTCELLSHFWRSFPPTTPQLEEKAVRMH
DALHRFHSARLKPFEDRVQREFSAVSQHLTSHLNQLLNTAYRKFAVWQQRKLQMR
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcagagaccgcgcaacattgagatcttattgcaatacttgaaactttttctc
tcctctcgctacatttcgtcacatcctacatccaccatgactacttcttcggaagatgtt
ctcatgcaagttggccaagtgcgttataagaaaggcgatggaactctgtatgtcatgaat
gaacgaatagcttggatgctggataatagagatacagtgtcggttagtcataaatacgct
gatataaaattacaaaaaatatcaccggacggaaagtcaaagatacaactccaattagtt
cttcatgatggcacgtcatcgacttttcactttgtcaataaaaatggccaagaagctcag
gtcaaagatcgagatgatgtcaaagaattgctccaacaattattgcccaaattcaaaaga
aaagtcaacaaggaattggaagagaaaaacaaactgctactggaaaatccgacactgctg
caactgtatcgagatcttgtaataactcaagtcataacatccgaagaattttggagtcaa
cacgcagctgcttatactcaggcaaagaatagtcagcgccaagagatcggtgtgaacagt
gcctttcttgctgatataaagcctcagactgatggttgcaacggtctcaaatataatctt
actcccgacataatggaatgtatattcaaaacttatccggcggtgaaaagaaaacatcag
gagaacgtgcctcacaaaatgtcggaatccgacttctggaccaagttctttcagtcacat
tattttcatcgagatcgtataaacgccgggaccaaagatctatttaccgagtgtgccaag
attgacgatcaggagctcaaaagggatatacaaactggtataaatgatccactcctcgat
ataacttctttcgaagatgttgtggtggatgacaatctttgcacggaatctggaagtact
gataaaaagtcggaccacaatatacatcagagtatgataaagcgcttcaatcaacacagc
attatggttttgaaagcgagtactgccaaaagacaggaaaccaaaacatctccacctcag
ctcaatggttcagcatcttgtgctaacaaaaatccatcaccgatcacaaatcgaacagat
gatcaaccaaagaataaaaaacttaggatacaagagaagttggtttacgacgatctggac
gggagcagtgagacaaaaacaaacgtcagtgcaccacttaacttgactcatgtagacagg
tatttgcatggtcctgtacccggtacgattgccaccgaattaacctccgaggaaatgcaa
agtacactgatgcatctaaaacgcgagtcagtgaattggataaacggtaataacctacca
agacaaccatccagttcgttagtcagctcgtccgctgcggtttctgcacttggtgaatta
acacccggtggggctctcatgaaagggttccgcgaggacaatgttggtcaattgatacca
aaggacttggaaaaagaactccgtaatgtgtatgtttgcacgtgtgagttactgagtcat
ttctggcggagttttccaccgacgacacctcaactggaggaaaaagcagtgaggatgcac
gatgcattgcacaggtttcattcagccaggctaaaaccttttgaggatcgtgtacagcga
gaattttcggcggtgtcccaacaccttacgagccatttgaatcagctgttgaatacggca
tacagaaaattcgctgtgtggcaacaacgaaagttacaaatgaggtag
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