Venturia canescens: 122417290
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Entry
122417290 CDS
T09386
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
vcan
Venturia canescens
Pathway
vcan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122417290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122417290
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122417290
mRNA degradation factors
5'-3' decay
Decapping complex
122417290
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
122417290
NCBI-ProteinID:
XP_043286620
LinkDB
All DBs
Position
10:14796402..14804144
Genome browser
AA seq
794 aa
AA seq
DB search
MADSFFGFDTSAAGQGLDDGIDCPIEEEEIAEEEEEYDALNDETFGSEATAGDWERDHEK
LAQITESGRLQHHNTSDSKNGIDIDIEDNLSHLVLDEKDGIVPRPGVWDSPPNLPVQRQK
TAQTLTSLKNVCTVEELERGLIINRPPPGLSKPPLIQQQQPQHLGGQFLFDSLSLGEQQL
NLPPNLLNGLPPPPRFPPGLGLQGPHSVVPPPTLRLPHPQFMQNPRGLPNQTGNMLRYPL
PPPHLMIPHGNQRQQPHGTFFPESLKQTLTKKVVRTDENVSGRVADYAQSVHKRNPPPPH
PSLGPPQFLRPSEHPMLSQFSNNHPLYSHHQQQHHQQQQQQQQQNQQQREHQQHGLNQRK
QNRPYQQNDQQGPHQPFFKDNQYPYQNRNNQRYNQQHHHHHSQNMNGSNESGDYDEYAGL
MTSREKQWLTNLQLLQHNTNQPYVDDYYYTVFCQRLNKKNENQEQREKKHHNNNGYHRDS
KDRDQSQHVFTTKVIYTPTQFENSLGKLQCGSVTAPRKIIDMDVVPNSDPQANPPPQAKE
TKKTRQRLLEIERLYTIQLKLEDANNPLALLAEQQQQQAEEGEPKPVKKTPRELINALLT
SLLQLLEEDKLASILSIRKGKTLLLRFLPYLSVTEYSKQLEELWVGLIRNLPIIGRRDPN
LLTRFFPEFHNWLETVHESFVLLRIARSFTESLNHNTKTNSLSFAVTNKFGVSVMASMLE
QAESVVFSVKQQAAEWSNFIISLADAIGSSPPSVAPCHPIAANTLNEHLNRIGNLSTERY
APLELLLTDANPSR
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcagactcttttttcggatttgatacatcggcagcaggccaaggattggacgacgga
atagattgtcccatagaagaagaagaaatagccgaagaagaagaagagtacgatgccctg
aacgacgagacttttggctctgaggcaacagctggtgactgggaacgagatcatgaaaaa
ttggctcaaatcaccgaatctgggagactgcaacatcataacacgagtgacagcaagaat
ggaatcgacatcgatatcgaggacaatctttcgcatttggtgcttgacgagaaggatgga
attgtaccgagaccgggtgtttgggacagtcccccaaatttgcctgttcaacgtcagaag
actgctcaaactttgacatcgttgaaaaatgtttgcaccgtagaagaattggagcgaggt
ttgataataaatcgtccgcctccgggtcttagtaaaccgccgttgatccagcaacaacag
ccacaacacttgggaggacaatttttgttcgactcgttatcccttggcgaacaacagttg
aacctcccaccaaacttattgaatggccttccaccaccacctcgttttccacctggattg
ggtctccaaggcccgcattcggttgttccaccacctacattgcgactgcctcatccacaa
tttatgcaaaatcctcgaggtttgcccaaccaaaccggaaatatgctgaggtatccgttg
cctcctcctcatttaatgataccgcatggaaaccagcgtcaacagccacatggtactttc
tttcctgaaagtttgaaacaaacgttgacaaaaaaagtcgttcgtactgacgaaaatgtg
tcaggccgcgttgcggattacgctcagagcgtacacaagcgtaacccgccaccaccacat
ccgagcttaggaccaccgcaatttttacgcccttccgagcatccgatgctgtcacaattc
tccaacaaccatcctctgtactcgcatcatcagcaacaacaccatcaacagcaacaacaa
cagcaacaacagaatcagcaacaacgagagcatcaacagcacggtctgaatcagcgcaag
caaaatcgaccttaccagcaaaacgatcagcaaggacctcatcagccattttttaaggac
aaccaatatccttatcaaaatcgtaacaatcagaggtacaaccagcagcatcatcatcat
cattcgcagaatatgaacggctccaatgaatctggtgattacgatgagtatgctgggcta
atgacttctcgagaaaagcagtggctgacaaatttacagctgttacaacacaatacaaat
cagccttacgttgatgattattattacaccgtattttgccaacgcttaaataagaaaaat
gagaatcaagagcagcgagaaaagaaacaccataacaacaacggttatcaccgcgattcc
aaagatcgagatcaatctcagcacgttttcaccactaaggtcatttacacgcctacccaa
tttgaaaactccctgggcaaacttcagtgcggaagcgttacagctcctcgaaagatcatt
gacatggacgtagttcccaacagtgatccacaagcaaatccaccgcctcaggccaaagag
actaaaaaaacccgacaacgtctcctagaaatcgagaggctttacacaattcaattaaaa
ctcgaggatgccaacaatccgttggcacttttagccgaacaacagcagcaacaagccgaa
gagggagaacctaagccagttaaaaaaactcctcgagaattgatcaatgccttgctcacc
tctcttttgcaacttttagaggaggacaaattagccagtatactcagtatccgtaaagga
aagactttattactacgatttttaccatatctaagcgtaacggaatattcgaaacaactc
gaggaattgtgggttggtttgattcggaatttgccgataatcggacgtcgcgatcccaat
ctcttgactcgtttctttcccgagtttcacaattggctcgaaacggtgcacgaatctttt
gtacttcttcgtatagcgaggagctttacggaatcgttaaatcataacaccaaaaccaat
agcctttccttcgctgtaaccaacaagttcggtgtttcggtgatggcttcgatgctggaa
caagcagaaagcgttgttttcagcgtgaagcaacaggccgcggaatggtcaaacttcata
ataagtttggcggacgcgattggttcgtcgccaccgagtgtggcgccctgccatccgatc
gcggcaaacacgcttaacgagcatctcaaccgaattggcaatctctctaccgagaggtat
gccccgttggagttattgttgaccgacgcgaatccttctcgatag
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