Venturia canescens: 122418498
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Entry
122418498 CDS
T09386
Name
(RefSeq) transcription factor Sox-1-like isoform X1
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
vcan
Venturia canescens
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vcan03000
]
122418498
Transcription factors [BR:
vcan03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
122418498
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
TFIIA
DDHD
Motif
Other DBs
NCBI-GeneID:
122418498
NCBI-ProteinID:
XP_043288675
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Position
11:12771594..12888859
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AA seq
545 aa
AA seq
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MLTMDTELKGSSMHGQMPPHPHQGVAPMGHHAGVSPYGPLGSIVHSPALSGSPPSSGGLG
GLSLQHHHQAAAQQHHYASMQVAQQQQQQQQHQTMHALASQQQAAAAAQHHSHQQQQQQQ
HSQQQQQQQQQQAQQQQAQQQQHQPPNNNNNTSKNNNIDRVKRPMNAFMVWSRGQRRKMA
QENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLL
KKDKFPLGGGVTGVGGMLGVDQRQVSSAGGPQQSQLPRDVYQMPNGYMPNGYMMHDPTAA
AYQQHAYGGHMGAAAAAVAAAGYPRYDMGHHMGGGSPSPINSYMNGYGGYGATTIPGGSP
SPYHQAQPGSQMSSHSPSGSSVKSEPTSPASGGLHTPTPSGGSSGGSGGGGVNSAGPVSN
IKREYMGQHSQQPQGDLRQMISMYLPQGGEQGVVQHGAGVYSPGPSPDSLAQHHSAIPQL
AHMSESDRKMLNPETGCYSESVRAWYYYGDGSAERHVPQDYSPRSAMSRVHPEGPFSTSD
SEERA
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgctaacgatggatacggagttgaaaggcagcagcatgcacggccaaatgcctccacat
cctcatcaaggtgtagcaccgatgggccatcacgcgggtgtatcgccttacgggccactt
ggctcgatagtacatagtccggctctttccggaagtcctccgagctccggaggtctcggt
ggtctcagcctgcagcaccatcatcaggcggccgcccaacagcatcattacgcctcgatg
caggttgcccaacaacagcaacagcagcaacaacatcaaacgatgcacgcattggcctcg
cagcaacaggctgccgcggctgcccagcatcattctcatcagcagcaacagcaacaacag
cattcccagcagcaacagcagcagcagcagcagcaggcccaacaacaacaggcgcagcaa
caacagcatcagccaccaaacaacaacaataatacgagtaagaacaacaacatcgatcgg
gtgaagaggccgatgaacgctttcatggtgtggtcgagaggtcaacgtcgtaagatggcc
caggagaatccaaagatgcacaattccgagatatcgaagagactcggagcggagtggaag
ctgctcagcgaaacggagaaacgtccgttcatcgatgaggccaaaaggctgcgagcggtc
cacatgaaggaacatcccgattacaagtaccggccacgaaggaagacaaagactcttttg
aagaaggacaaattcccgttgggcggtggtgttaccggagtcggtggcatgctaggagtc
gatcaacgccaagtcagctccgccggtggaccccaacagtctcaactgccccgggacgtt
tatcaaatgccgaatggatacatgccgaacggttacatgatgcacgacccgacggccgcg
gcttatcaacaacacgcttacggcggacacatgggtgccgctgcggctgcagtcgccgct
gccggatatcctcgctacgacatgggccaccatatggggggaggcagtccaagtcccata
aacagctacatgaacggttacggtggttacggggcgacaacgatacccggaggttcaccc
tcgccttatcatcaggcccaacccggctctcaaatgtccagtcatagcccaagcggtagc
agcgtcaaatccgaacctacgagtccggcgagcggcggtttgcacacgccgacacccagc
ggcggttcctccggtggaagtggcggtggcggcgttaattccgccggacctgtatccaat
atcaaaagggaatacatgggacaacacagccaacaaccacagggtgatctcagacaaatg
atctcgatgtacctgccccagggaggtgaacagggcgtcgtacagcacggtgctggtgtt
tactcaccaggaccatcccccgattcgttggctcaacatcattctgccattccacaactc
gcccacatgtcggaaagtgatcgcaaaatgttgaatcctgagaccggttgttattcagaa
tccgttcgcgcatggtattattacggggacggaagtgcggagcgccacgttccccaggat
tattctccaagatctgcgatgtcacgagtgcatccggaaggcccattttccacgagtgat
tccgaggaacgagcatga
DBGET
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