Venturia canescens: 122419177
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Entry
122419177 CDS
T09386
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
vcan
Venturia canescens
Pathway
vcan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122419177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122419177
Enzymes [BR:
vcan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122419177
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122419177
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122419177
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_1
LRR_4
LRR_LRWD1
LRR_9
Motif
Other DBs
NCBI-GeneID:
122419177
NCBI-ProteinID:
XP_043289435
LinkDB
All DBs
Position
1:28347935..28806913
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AA seq
547 aa
AA seq
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MSRNNKDKYENSNPRRMHTIMSTEDANSGKKSYWPELEITGSIRNLSPNMWQLTHLTALY
LNDNSLQRIPSEIGRLIHLRTLDLSNNKLRSLPAELGDLIYLRELLLNQNYLRVLPYEIG
KLFQLQVLGLQGNPLSKEMMALYGEPSGTYKLLSYMLDNLQVTANHPPQRPWIPLTRPNR
TRPTCIFTVMCYNVLCDKYATRQMYGYCPSWALDWEYRKKGILDEIRHYAADLISLQEVE
TDQFYNFFLPELKHDGYDGIFSPKSRAKTMAENDRKYVDGCAIFYRTAKFTLIKDHLVEF
NQLAMANAEGSDNMLNRVMPKDNIGLAALLKTTEAAWDNGLPSDPAQVQQPILVCTAHIH
WDPEFCDVKLIQTMMLSNELRTILDQAGQSFRPGHKPDSSNVQVLLCGDFNSLPDSGVIE
FLTSGRVSSDHRDFKELAYKTCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTFDFK
GIIDYIFYSKQSMVPLGLLGPLSADWFREHKVVGCPHPHIPSDHFPLLVELEMTPTAGTS
NGLISRR
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcaataataaggacaagtatgagaactccaatccgcgccgaatgcacactatc
atgtcaacggaagatgcgaattcgggaaagaaatcttattggccggagctggagataaca
ggaagcataaggaatcttagtccgaatatgtggcaattgactcatttgactgctttgtat
ctcaatgacaatagtcttcaaaggataccatctgaaattggacgtcttatacatctgaga
actctagatcttagtaacaacaaacttcgtagtttgcctgctgagctgggggatctcatc
tatcttagggagttgttattgaatcaaaactatcttcgcgtgttaccgtatgaaatcgga
aagttattccagttacaagtgttaggccttcaaggaaatccactgagcaaggaaatgatg
gcgttgtatggagaaccatcggggacctacaagctgctgtcttacatgctcgacaactta
caagtaacagcgaatcatccaccacagaggccatggataccgttgaccaggccaaacagg
acgagacccacatgcatatttacggtgatgtgttacaacgtactttgcgacaagtatgcg
acgcgacagatgtacggttactgtccaagctgggccctcgactgggagtatcggaaaaag
ggcatactcgacgaaatacgtcattacgcggctgatcttatcagtcttcaggaagtcgag
actgatcaattttataatttcttcctgccggaactaaagcacgacggttatgacgggatt
ttctcgcccaagtctcgagcgaagacgatggctgagaacgaccgcaaatacgtcgatgga
tgcgccattttctacagaacagccaaattcactctgataaaagaccatcttgtggaattc
aatcaattggcaatggcaaatgcagaaggttcggacaatatgttgaacagagttatgccg
aaggacaacatcgggctcgctgctcttttaaaaacgaccgaagctgcatgggacaatggt
ctcccatcggatcctgctcaagttcaacaaccgattttagtttgcacagcgcacatccat
tgggatccagaattttgtgacgtcaagcttattcaaacaatgatgctcagtaacgaactg
cgtacaatattggaccaagcgggacaatcttttcgacccggtcacaagcccgactcatcc
aatgttcaagtattattatgtggcgatttcaattcattgcctgactcaggagtcatcgag
tttttgacatcaggacgagtatcatccgatcatcgtgacttcaaagaattggcgtacaaa
acgtgcttacaaaaaatatccggctgcgataaaccaaacgaatttacccactcatttaaa
cttgcttctgcatatagtgaggatatcatgccctataccaactatacattcgattttaag
ggcataatagactacattttctactcaaagcaaagtatggtgcccttaggtttgctagga
ccgttgagtgccgactggttccgagaacacaaagtggtcggttgtccacatcctcatata
ccatccgaccactttcccttgttagtcgaactggaaatgacaccgacggcagggactagt
aacggtttgatctctcgcaggtag
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