Venturia canescens: 122419350
Help
Entry
122419350 CDS
T09386
Name
(RefSeq) alpha-protein kinase 1 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
vcan
Venturia canescens
Pathway
vcan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122419350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vcan03000
]
122419350
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122419350
04121 Ubiquitin system [BR:
vcan04121
]
122419350
Enzymes [BR:
vcan01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122419350
Transcription factors [BR:
vcan03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122419350
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122419350
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122419350
Ubiquitin system [BR:
vcan04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122419350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Nup35_RRM_2
zf-C3HC4_2
zf-UDP
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
122419350
NCBI-ProteinID:
XP_043289758
LinkDB
All DBs
Position
1:complement(33378825..33393338)
Genome browser
AA seq
1155 aa
AA seq
DB search
MSVLNQSGDEAVECPLCMEPLEVDDLNFFPCTCGYQICRFCWHRIRTDENGLCPACRKAY
SENPADFKPLSKEEISRLKAEKRLKDQQRKQRVTENRKHLANVRVVQKNLVFVVGLPMRL
ADADVLKRHEYFGKFGKIHKVVINQSTSYAGSQGPSASAYVTYQRQEDALRAIEAVNNIV
VDGRTIKTSLGTTKYCSHFMRNQSCPKPDCMYLHDLGDQEASFTKEEMHQGKHQDYERKL
VQSLHAHASSTQRKPTPSPPVTGTTVRENGITTSQIKEAWPSLQPGQTNNPQTNSKESSP
PTQPSSNQQSGVSLSNGSASSVMNPSVSPVALVQSQQQSSQQNNNNINNNNNNNKGELSN
VSNTTRRGKSNSESKAQAARNKHKNNQNKEKHGAQNSTVSGSGGVGTTTRTTSRSESSST
SSSQSSVVTQSIGQQRGDIRGFLESDASLTKDMQSRQNGSFKLDENSSNDLDNAKQESQQ
QELLKNVQLDIEVDDKIDEATRNVNGTSDRKTNGERSRSESESDNQREGSTPASTVSSNE
ESSSSSGNQQTERRLVPSIEEHRRQQLSVENSIALLGSPQGVNTNGGGVSSRQTPPPGLH
GCSTNITNGNLTQSMQLNHRSIFQTDNNSFFSSNSFQKVSTIVTMPPNSQTANANLDWTN
TCLAPIPDSLPSVHSSEDWQAAFGFQPEKCRITPNHHGKKPNSPVPQNMPFTPEDFIDDE
DYMNSQYEIGPNKGSRVFDPSHLVHSPASKFMADFQQNSLQRRLAMQSQQNQENCEYIKQ
NGHGAVDGPTSGFGKQSHDPATVNNSVNSDIKPEDDLGFDPFHETQKALAELMENEMQLQ
QQRLFQQQQQQQQQQQQQQHHQHQQQQQQREREEHNRVQQQGLAALGPQHFTQVHLAHLQ
QQATHLQNLHVLHQSHSLLSRLPQNLMQQQQQGGAGQNGQQTSMTTNSLGPRTRLPPPGF
PGSTPNHMNSFGLGIPRPAPTNNALAVAQSSQQVPYLPNGNPLLTSQGANKCSADGVYSL
KDWCEINGQPQHQHQHQQQQQQFHHQSLHQKGGWNNFGPIADWTSIDPAIVSSSRPLSFQ
ATSTWQFSRAHPSHPVPHNAQQEQNAPAQHWAMQPPPGFGGPSITAQMNSQQGNTTAQPH
ANTKLISAGSEIENM
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtattgaaccaaagcggcgatgaggccgtcgaatgtccgctttgcatggaaccc
ctcgaagtcgacgatctcaatttttttccatgcacatgcggatatcaaatttgtcgcttc
tgctggcacagaattcgtacagacgaaaatggtctttgtccagcatgtaggaaggcctat
tctgaaaaccctgctgatttcaagcccctttcgaaagaagaaatatccaggctaaaagcg
gaaaaaaggctgaaggaccaacaacgaaaacaacgggtcacagagaatcgtaaacatcta
gcgaatgttcgtgttgtacaaaaaaatcttgtttttgtggtgggtttgcccatgcggttg
gcggatgcagacgtactcaagaggcacgagtattttggcaaatttggaaagattcacaaa
gtcgtgataaatcaaagtacgtcgtacgcggggtctcaaggtccaagcgcttcggcctac
gttacctatcagcgacaagaagacgcgttacgggctattgaagcggttaacaacatcgta
gttgatggaagaacaataaaaacatcactcggcacgaccaagtattgttcacacttcatg
agaaatcaatcgtgtccgaaaccggattgcatgtatctccatgatcttggtgatcaagaa
gcatctttcacgaaagaagagatgcaccagggaaaacatcaggattacgagcggaagctg
gtacaatcgttacacgctcacgcgtcatcgacacaacggaaaccaacaccctcgccgccg
gtaacgggaacaacggttcgagaaaacggcataacaacttctcagatcaaagaggcatgg
ccatcgttacaacctggtcaaactaataatccacagaccaacagtaaagaatcgtctccc
ccgacgcaaccaagttcgaatcagcaatccggtgtgtcgttatcaaatggtagcgcgtca
tcggtaatgaaccctagtgtgtcacctgtcgcattggtacagtcgcaacaacaatcatct
cagcaaaacaacaataatatcaacaataacaacaataataataagggtgagcttagcaat
gtgtcgaatacgactcgtcgtggtaaaagcaacagcgagagtaaggcacaagcggcgagg
aataagcacaaaaataatcagaataaggagaaacacggagcgcaaaattcaacggtaagt
ggtagtggtggggtgggaacaacgacgcgtacgacatcgagatcggaatcgtcgagcaca
tcgtcatcgcagagttcggtcgtaacacaatccatcggtcaacaacggggtgacattcga
ggtttcttggagagtgatgcaagcttaacgaaagacatgcaatctaggcaaaatggaagt
tttaaattagatgaaaattcctccaatgatttggataatgcgaagcaagaaagtcaacaa
caggagttgttgaagaacgtacaattagatatcgaagttgatgataaaattgatgaagca
actagaaacgttaatggtacgagtgatcggaaaacgaatggcgaaagaagccgatcggag
agcgaaagtgataatcaaagagaaggcagcacaccagccagcactgtttcaagtaacgag
gaatcttcgagctcaagcggcaatcaacaaaccgaaaggagactagtacccagtatcgag
gaacatcgacgacagcaacttagtgtcgaaaattctatcgctcttttaggctcaccgcaa
ggagttaacacaaacgggggaggtgttagttcgcggcaaacaccaccacctggtcttcat
ggatgttcaacgaatatcaccaacggcaatttaactcaatcgatgcagctcaatcatcgt
tccatcttccagacggataataatagtttcttcagttccaatagttttcaaaaagtttca
acaattgtgacaatgccaccaaactcgcaaacagcgaacgcaaatctcgactggacgaat
acgtgcctggcgccaatacctgattcgttaccttcggtgcactcgagtgaggattggcaa
gcggctttcggcttccagcccgaaaaatgtcgtattacgccaaatcatcacggtaaaaag
ccgaattcccccgtaccgcagaacatgcccttcacacctgaggatttcatcgacgatgag
gattatatgaattcacagtacgagatcggccccaacaaaggatctcgagtgtttgatccc
agtcacctagttcattcgcctgcctccaaattcatggcggacttccagcaaaattcattg
cagcggaggttagctatgcagtcgcagcagaatcaagaaaactgtgaatacataaaacaa
aatggccatggagctgtggacggtcctaccagtggttttggaaaacaatcccacgatccg
gctaccgttaataatagcgtgaattcggatatcaagcctgaggacgacctcgggttcgat
cccttccacgagacacagaaggctctggctgaactcatggagaacgagatgcagttgcag
caacagagactgtttcagcagcagcagcagcagcagcaacaacagcagcagcaacaacat
catcaacatcaacagcagcagcaacagagggaacgagaggaacataacagggttcagcaa
caaggtctcgctgcattgggacctcaacactttactcaggttcatctggcacatcttcag
caacaggcgacacacttgcagaacttacacgttcttcatcagtcgcacagtctgctctct
cgtcttccacagaatctgatgcagcagcaacaacaaggcggggcgggtcagaacggtcag
caaacttcgatgacaacaaacagcctcggtccacgcacccgacttcctccacctgggttt
ccgggctcgacacctaatcatatgaattcctttgggcttggtataccaagacccgcgcct
acgaataatgctctcgccgtagcacagtcatcacagcaagtaccgtatcttccgaacggc
aatcctcttctcacttcccaaggagcgaacaaatgttctgccgacggagtctatagtctg
aaagactggtgcgaaataaatggccagccacagcaccagcatcaacaccagcaacagcaa
caacaatttcatcatcaatcgctgcatcagaagggaggatggaataattttgggcctatt
gccgattggacctcgattgatccggcaatcgtgagctcatcgagaccgctctcgttccaa
gcaacgtcgacatggcaattctcacgagctcacccgtctcaccctgtgccacacaatgcg
caacaggaacaaaacgcacctgctcagcactgggcaatgcagccaccgccgggtttcggc
ggacctagcattacagctcaaatgaacagtcaacagggaaatacaacagcacagccgcac
gctaatactaaacttatctctgcaggttcggaaatcgaaaatatgtaa
DBGET
integrated database retrieval system
