Varibaculum cambriense: CYK25_000965
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Entry
CYK25_000965 CDS
T09090
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
vcb
Varibaculum cambriense
Pathway
vcb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CYK25_000965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcb03400
]
CYK25_000965
Enzymes [BR:
vcb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
CYK25_000965
DNA repair and recombination proteins [BR:
vcb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CYK25_000965
Prokaryotic type
CYK25_000965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
PTHB1_CtH
Motif
Other DBs
NCBI-ProteinID:
WIK88823
LinkDB
All DBs
Position
complement(224189..224851)
Genome browser
AA seq
220 aa
AA seq
DB search
MSSNLEKIMHPSWVPAMEPVAGKIGEMGKMLRKEGNNYFPAGKDIFRAFTYPFDQVKVLI
VGQDPYPTPGNAMGLSFSVKPGVPIPKSLQNIFKELHEDLGCSLPSSGDLRPWAQQGVML
LNRVLTVSPNEAGSHRGRGWEEVTDCAISALVQRDSPLVAILWGKQAQSLRPALGETPCI
ESAHPSPLSASRGFFGSHPFSRTNSWLQQLGAAPINWQLP
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcaacctggaaaaaatcatgcacccctcctgggtaccagctatggagccggta
gctggcaaaatcggcgagatggggaaaatgctgcggaaggaaggaaataactactttcct
gctggcaaagacatttttcgagccttcacctatccgtttgatcaggtaaaagtgttgatc
gtaggccaagacccttatcccactccggggaacgcgatgggactatcattttcggtaaaa
ccgggagtgcccatcccgaaatcgctgcaaaatattttcaaggagctccacgaagatcta
ggttgctccctgcccagcagcggagatttacgtccctgggctcagcagggcgtaatgctg
ctaaatcgggtactcaccgtctcccctaatgaagccggatctcatcgaggtcgcggatgg
gaagaggtaaccgactgcgcgatttctgccttggtgcagcgggatagccccctagtcgcc
atcttatggggcaaacaggcacagtctttgcgtcccgcgctgggggaaactccttgcata
gagtctgcccacccctcacctctttctgcctcccgaggattcttcggttcgcatccgttt
tcacgtaccaattcctggttgcagcagttaggtgcggcgccgataaattggcaacttccc
tga
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